Strain Fitness in Variovorax sp. SCN45 around GFF6325

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
116,443	+		GFF6324	0.56	-0.0
116,443	+		GFF6324	0.56	+0.5
116,443	+		GFF6324	0.56	+0.3
116,443	+		GFF6324	0.56	-0.0
116,443	+		GFF6324	0.56	+0.9
116,443	+		GFF6324	0.56	-0.3
116,443	+		GFF6324	0.56	-0.4
116,443	+		GFF6324	0.56	-1.5
116,443	+		GFF6324	0.56	-2.1
116,444	-		GFF6324	0.56	-0.4
116,444	-		GFF6324	0.56	-0.1
116,444	-		GFF6324	0.56	-0.7
116,524	+		GFF6324	0.60	-0.7
116,524	+		GFF6324	0.60	-1.0
116,524	+		GFF6324	0.60	-0.0
116,525	-		GFF6324	0.60	-0.7
116,525	-		GFF6324	0.60	-0.8
116,525	-		GFF6324	0.60	-0.5
116,614	+		GFF6324	0.65	+0.1
116,614	+		GFF6324	0.65	+0.3
116,614	+		GFF6324	0.65	-0.7
116,614	+		GFF6324	0.65	-0.3
116,614	+		GFF6324	0.65	-0.9
116,614	+		GFF6324	0.65	-0.7
116,614	+		GFF6324	0.65	-0.5
116,614	+		GFF6324	0.65	+0.4
116,614	+		GFF6324	0.65	+1.1
116,615	-		GFF6324	0.65	+0.4
116,615	-		GFF6324	0.65	+1.1
116,615	-		GFF6324	0.65	+0.3
116,615	-		GFF6324	0.65	+1.9
116,794	+		GFF6324	0.74	-0.8
116,794	+		GFF6324	0.74	+0.9
116,794	+		GFF6324	0.74	+0.5
116,794	+		GFF6324	0.74	-1.1
116,794	+		GFF6324	0.74	-1.2
116,794	+		GFF6324	0.74	-1.6
116,794	+		GFF6324	0.74	-0.2
116,794	+		GFF6324	0.74	-0.7
116,794	+		GFF6324	0.74	-1.3
116,794	+		GFF6324	0.74	+0.1
116,794	+		GFF6324	0.74	-1.3
116,794	+		GFF6324	0.74	+0.4
116,794	+		GFF6324	0.74	-0.9
116,794	+		GFF6324	0.74	-0.3
116,795	-		GFF6324	0.74	-1.5
116,795	-		GFF6324	0.74	+0.9
116,795	-		GFF6324	0.74	-0.6
116,795	-		GFF6324	0.74	-1.1
116,795	-		GFF6324	0.74	+0.3
116,795	-		GFF6324	0.74	-0.7
116,795	-		GFF6324	0.74	-0.2
116,795	-		GFF6324	0.74	-0.7
116,795	-		GFF6324	0.74	-2.5
116,795	-		GFF6324	0.74	+0.1
116,795	-		GFF6324	0.74	+0.3
116,878	+		GFF6324	0.78	+0.3
116,878	+		GFF6324	0.78	-0.8
116,879	-		GFF6324	0.78	+1.6
116,879	-		GFF6324	0.78	-0.6
116,879	-		GFF6324	0.78	-0.1
117,022	+		GFF6324	0.86	-1.8
117,022	+		GFF6324	0.86	+0.1
117,022	+		GFF6324	0.86	-0.7
117,022	+		GFF6324	0.86	-1.3
117,022	+		GFF6324	0.86	+0.0
117,022	+		GFF6324	0.86	-0.7
117,022	+		GFF6324	0.86	-0.1
117,022	+		GFF6324	0.86	-0.7
117,022	+		GFF6324	0.86	-0.4
117,022	+		GFF6324	0.86	-0.0
117,022	+		GFF6324	0.86	+1.3
117,022	+		GFF6324	0.86	-0.6
117,022	+		GFF6324	0.86	+0.3
117,022	+		GFF6324	0.86	-1.0
117,022	+		GFF6324	0.86	+0.5
117,023	-		GFF6324	0.86	-1.0
117,023	-		GFF6324	0.86	+0.3
117,023	-		GFF6324	0.86	-0.2
117,023	-		GFF6324	0.86	-0.5
117,023	-		GFF6324	0.86	-0.5
117,023	-		GFF6324	0.86	-1.3
117,023	-		GFF6324	0.86	-0.2
117,023	-		GFF6324	0.86	-0.3
117,023	-		GFF6324	0.86	-0.9
117,023	-		GFF6324	0.86	+0.9
117,023	-		GFF6324	0.86	-0.4
117,023	-		GFF6324	0.86	+0.1
117,023	-		GFF6324	0.86	-1.1
117,076	+		GFF6324	0.89	-0.4
117,076	+		GFF6324	0.89	-0.6
117,077	-		GFF6324	0.89	+1.3
117,077	-		GFF6324	0.89	-0.1
117,121	+				+0.3
117,133	+				-0.2
117,133	+				-2.6
117,133	+				-1.0
117,133	+				-1.8
117,133	+				+0.5
117,133	+				-1.7
117,133	+				+0.1
117,134	-				-0.0
117,134	-				-0.2
117,134	-				-0.3
117,134	-				+1.4
117,161	-				-0.4
117,161	-				-0.3
117,341	+				-0.0
117,341	+				-0.6
117,391	+				-1.2
117,391	+				-0.5
117,391	+				+1.3
117,392	-				+0.8
117,427	+				-0.1
117,427	+				+0.1
117,427	+				-0.8
117,427	+				+0.9
117,427	+				-0.4
117,427	+				-0.2
117,427	+				-0.0
117,427	+				+0.3
117,428	-				-1.3
117,428	-				+0.1
117,428	-				-2.2
117,428	-				-0.3
117,428	-				-0.9
117,428	-				-0.7
117,428	-				-0.8
117,428	-				+0.7
117,466	+				-0.6
117,466	+				-0.2
117,466	+				-0.5
117,466	+				-0.5
117,466	+				-1.1
117,466	+				-0.1
117,466	+				-0.9
117,466	+				+0.0
117,466	+				-1.5
117,466	+				-0.1
117,466	+				+0.9
117,466	+				+0.5
117,466	+				-0.9
117,466	+				-0.2
117,466	+				-1.4
117,466	+				-1.3
117,466	+				-0.8
117,466	+				-1.6
117,466	+				+0.5
117,466	+				+0.9
117,466	+				-0.3
117,466	+				+0.6
117,466	+				-0.3
117,466	+				-0.8
117,466	+				-0.5
117,466	+				-0.3
117,466	+				+0.3
117,466	+				-0.6
117,466	+				-0.9
117,466	+				-0.4
117,466	+				-0.2
117,466	+				-0.5
117,467	-				+0.3
117,467	-				-2.5
117,467	-				-1.3
117,467	-				-1.5
117,467	-				-0.3
117,467	-				-1.6
117,467	-				-2.0
117,467	-				-1.5
117,467	-				-0.0
117,467	-				-0.6
117,467	-				+0.2
117,467	-				-0.6
117,467	-				+1.5
117,467	-				-0.5
117,467	-				-1.7
117,467	-				+0.1
117,467	-				-0.5
117,467	-				-1.2
117,467	-				-0.5
117,467	-				-0.7
117,467	-				-2.1
117,467	-				-0.2
117,472	+				+0.1
117,472	+				-1.1
117,472	+				-0.4
117,472	+				-0.6
117,472	+				-0.7
117,472	+				-0.3
117,472	+				-0.5
117,472	+				+1.3
117,472	+				+0.8
117,472	+				-1.1
117,472	+				+0.3
117,472	+				+0.1
117,472	+				-2.9
117,472	+				+1.5
117,472	+				-1.7
117,472	+				-2.2
117,472	+				-0.7
117,472	+				-0.2
117,472	+				+1.6
117,472	+				-2.1
117,472	+				-0.5
117,472	+				+0.4
117,472	+				-0.2
117,472	+				+1.1
117,473	-				-0.9
117,473	-				-0.0
117,473	-				-0.8
117,473	-				-1.9
117,473	-				-0.7
117,473	-				+0.1
117,473	-				-0.8
117,473	-				-0.8
117,473	-				-0.3
117,473	-				-0.8
117,473	-				+0.2
117,473	-				-0.6
117,473	-				-1.0
117,473	-				-0.4
117,473	-				-0.1
117,473	-				-0.4
117,473	-				+0.2
117,473	-				-0.1
117,473	-				-0.7
117,473	-				+0.1
117,473	-				-0.2
117,473	-				-1.4
117,473	-				-1.1
117,473	-				+0.0
117,473	-				-0.8
117,473	-				+0.3
117,473	-				-0.4
117,473	-				-0.5
117,473	-				-0.6
117,473	-				-0.5
117,473	-				+1.1
117,610	+		GFF6325	0.17	-2.1
117,611	-		GFF6325	0.17	-0.2
117,611	-		GFF6325	0.17	-1.0
117,611	-		GFF6325	0.17	-0.3
117,611	-		GFF6325	0.17	-1.6
117,611	-		GFF6325	0.17	-1.0
117,611	-		GFF6325	0.17	-0.3
117,611	-		GFF6325	0.17	-1.7
117,611	-		GFF6325	0.17	-0.3
117,628	+		GFF6325	0.18	+1.2
117,628	+		GFF6325	0.18	-0.1
117,628	+		GFF6325	0.18	-0.2
117,628	+		GFF6325	0.18	+1.4
117,628	+		GFF6325	0.18	-2.0
117,629	-		GFF6325	0.18	-2.5
117,629	-		GFF6325	0.18	-1.0
117,629	-		GFF6325	0.18	-1.0
117,629	-		GFF6325	0.18	-0.8
117,629	-		GFF6325	0.18	-0.7
117,643	+		GFF6325	0.19	-1.6
117,643	+		GFF6325	0.19	-0.8
117,643	+		GFF6325	0.19	+0.1
117,643	+		GFF6325	0.19	-0.6
117,643	+		GFF6325	0.19	-0.1
117,643	+		GFF6325	0.19	+0.3
117,643	+		GFF6325	0.19	+0.9
117,643	+		GFF6325	0.19	-0.4
117,643	+		GFF6325	0.19	-0.3
117,643	+		GFF6325	0.19	+0.1
117,643	+		GFF6325	0.19	+0.1
117,643	+		GFF6325	0.19	+0.2
117,643	+		GFF6325	0.19	-0.1
117,644	-		GFF6325	0.20	-1.2
117,644	-		GFF6325	0.20	-0.3
117,644	-		GFF6325	0.20	-1.3
117,644	-		GFF6325	0.20	-0.1
117,644	-		GFF6325	0.20	+0.2
117,644	-		GFF6325	0.20	+0.1
117,644	-		GFF6325	0.20	+0.7
117,644	-		GFF6325	0.20	-1.1
117,644	-		GFF6325	0.20	+0.6
117,644	-		GFF6325	0.20	+0.3
117,644	-		GFF6325	0.20	-0.8
117,644	-		GFF6325	0.20	+0.5
117,644	-		GFF6325	0.20	-0.9
117,644	-		GFF6325	0.20	-2.7
117,686	+		GFF6325	0.23	-0.1
117,686	+		GFF6325	0.23	+0.3
117,686	+		GFF6325	0.23	+1.5
117,686	+		GFF6325	0.23	-0.6
117,686	+		GFF6325	0.23	-0.8
117,687	-		GFF6325	0.23	+0.5
117,687	-		GFF6325	0.23	-0.3
117,687	-		GFF6325	0.23	+0.0
117,687	-		GFF6325	0.23	-0.9
117,687	-		GFF6325	0.23	-0.2
117,687	-		GFF6325	0.23	-0.4
117,687	-		GFF6325	0.23	-0.2
117,901	+		GFF6325	0.39	-0.9
117,901	+		GFF6325	0.39	+1.4
117,901	+		GFF6325	0.39	-0.1
117,901	+		GFF6325	0.39	+1.4
117,902	-		GFF6325	0.39	+0.9
117,902	-		GFF6325	0.39	+0.3
117,902	-		GFF6325	0.39	+0.3
117,902	-		GFF6325	0.39	-2.2
117,902	-		GFF6325	0.39	-0.6
117,902	-		GFF6325	0.39	+0.1
117,902	-		GFF6325	0.39	-0.6
117,910	+		GFF6325	0.40	+0.6
117,910	+		GFF6325	0.40	+0.3
117,910	+		GFF6325	0.40	-2.4
117,910	+		GFF6325	0.40	+0.8
117,910	+		GFF6325	0.40	-1.1
117,910	+		GFF6325	0.40	+1.3
117,911	-		GFF6325	0.40	-0.5
117,911	-		GFF6325	0.40	+0.1
117,911	-		GFF6325	0.40	-0.1
117,911	-		GFF6325	0.40	-0.5
117,911	-		GFF6325	0.40	+0.6
117,911	-		GFF6325	0.40	+0.8
117,911	-		GFF6325	0.40	-0.4
117,911	-		GFF6325	0.40	-1.2
118,006	+		GFF6325	0.47	+0.7
118,006	+		GFF6325	0.47	-0.6
118,006	+		GFF6325	0.47	-0.6
118,006	+		GFF6325	0.47	-0.5
118,006	+		GFF6325	0.47	+0.0
118,006	+		GFF6325	0.47	-0.8
118,006	+		GFF6325	0.47	-0.4
118,006	+		GFF6325	0.47	+1.1
118,006	+		GFF6325	0.47	-0.1
118,006	+		GFF6325	0.47	-0.1
118,006	+		GFF6325	0.47	-1.9
118,006	+		GFF6325	0.47	+0.3
118,006	+		GFF6325	0.47	+0.1
118,006	+		GFF6325	0.47	-1.1
118,006	+		GFF6325	0.47	+0.3
118,006	+		GFF6325	0.47	+1.1
118,006	+		GFF6325	0.47	-1.1
118,006	+		GFF6325	0.47	-1.5
118,007	-		GFF6325	0.47	-1.0
118,007	-		GFF6325	0.47	+0.3
118,007	-		GFF6325	0.47	+0.1
118,007	-		GFF6325	0.47	-0.4
118,007	-		GFF6325	0.47	-1.5
118,007	-		GFF6325	0.47	-0.5
118,007	-		GFF6325	0.47	-0.0
118,007	-		GFF6325	0.47	-1.5
118,007	-		GFF6325	0.47	+0.1
118,072	+		GFF6325	0.52	-0.5
118,072	+		GFF6325	0.52	-0.5
118,072	+		GFF6325	0.52	-1.7
118,072	+		GFF6325	0.52	-0.6
118,072	+		GFF6325	0.52	-0.3
118,072	+		GFF6325	0.52	+0.9
118,072	+		GFF6325	0.52	-0.4
118,072	+		GFF6325	0.52	+0.2
118,072	+		GFF6325	0.52	-0.3
118,072	+		GFF6325	0.52	-0.6
118,072	+		GFF6325	0.52	-0.7
118,072	+		GFF6325	0.52	-0.5
118,072	+		GFF6325	0.52	-0.2
118,073	-		GFF6325	0.52	-0.7
118,073	-		GFF6325	0.52	-0.5
118,073	-		GFF6325	0.52	-1.1
118,073	-		GFF6325	0.52	-0.7
118,073	-		GFF6325	0.52	-1.2
118,073	-		GFF6325	0.52	-0.3
118,073	-		GFF6325	0.52	-0.7
118,073	-		GFF6325	0.52	-0.3
118,073	-		GFF6325	0.52	+0.6
118,073	-		GFF6325	0.52	-0.5
118,073	-		GFF6325	0.52	-1.7
118,073	-		GFF6325	0.52	+1.4
118,073	-		GFF6325	0.52	+0.0
118,073	-		GFF6325	0.52	-0.9
118,073	-		GFF6325	0.52	+0.8
118,073	-		GFF6325	0.52	-1.3
118,073	-		GFF6325	0.52	-1.1
118,073	-		GFF6325	0.52	-0.5
118,073	-		GFF6325	0.52	-0.4
118,073	-		GFF6325	0.52	+0.9
118,135	+		GFF6325	0.57	-1.5
118,135	+		GFF6325	0.57	-0.6
118,135	+		GFF6325	0.57	-1.1
118,135	+		GFF6325	0.57	-1.5
118,135	+		GFF6325	0.57	-2.4
118,136	-		GFF6325	0.57	-1.1
118,136	-		GFF6325	0.57	-0.6
118,136	-		GFF6325	0.57	+1.1
118,136	-		GFF6325	0.57	-0.3
118,136	-		GFF6325	0.57	+0.6
118,136	-		GFF6325	0.57	+0.9
118,136	-		GFF6325	0.57	-0.6
118,136	-		GFF6325	0.57	+0.2
118,349	+		GFF6325	0.73	-0.2
118,387	+		GFF6325	0.75	+0.9
118,387	+		GFF6325	0.75	-0.1
118,387	+		GFF6325	0.75	-1.4
118,387	+		GFF6325	0.75	-0.5
118,388	-		GFF6325	0.76	-0.3
118,388	-		GFF6325	0.76	+0.3
118,388	-		GFF6325	0.76	-0.1
118,495	+		GFF6325	0.84	+0.1
118,585	+				-1.0
118,585	+				-0.3
118,585	+				+0.5
118,585	+				-1.1
118,585	+				-0.7
118,585	+				-0.9
118,585	+				+0.5
118,585	+				+0.5
118,586	-				+0.0
118,586	-				-1.0
118,586	-				-1.0
118,586	-				+0.9
118,586	-				-1.8
118,586	-				-0.0
118,586	-				-0.6
118,586	-				-0.7
118,586	-				-1.8
118,738	+				-0.5
118,738	+				-0.7
118,738	+				+0.9
118,738	+				-1.3
118,738	+				-0.1
118,738	+				+0.4
118,739	-				-0.2
118,739	-				-0.7
118,739	-				+0.2
118,739	-				+0.3
118,739	-				+1.4
118,739	-				-0.7
118,757	+				+0.0
118,757	+				-0.9
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