Strain Fitness in Variovorax sp. SCN45 around GFF6299

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
87,110	+				-1.6
87,110	+				-2.0
87,110	+				-0.0
87,110	+				-0.8
87,110	+				-0.5
87,110	+				-0.5
87,110	+				-0.3
87,110	+				-0.5
87,110	+				-0.9
87,111	-				-2.1
87,111	-				+0.1
87,111	-				-0.7
87,111	-				+1.9
87,111	-				-1.7
87,111	-				+0.3
87,111	-				-0.7
87,111	-				-0.4
87,111	-				-0.1
87,144	-				-1.1
87,144	-				+0.9
87,215	+		GFF6298	0.11	-0.0
87,215	+		GFF6298	0.11	-1.2
87,215	+		GFF6298	0.11	-0.8
87,215	+		GFF6298	0.11	-0.6
87,215	+		GFF6298	0.11	+2.4
87,215	+		GFF6298	0.11	+1.0
87,216	-		GFF6298	0.12	-0.1
87,216	-		GFF6298	0.12	-1.9
87,216	-		GFF6298	0.12	-0.7
87,216	-		GFF6298	0.12	-1.7
87,216	-		GFF6298	0.12	+1.2
87,418	-		GFF6298	0.33	+0.4
87,418	-		GFF6298	0.33	-0.2
87,418	-		GFF6298	0.33	-0.1
88,048	+				-1.3
88,048	+				-0.7
88,048	+				-0.0
88,048	+				-0.4
88,048	+				-1.1
88,048	+				-0.6
88,048	+				-0.4
88,048	+				+0.1
88,048	+				-0.8
88,048	+				-0.8
88,048	+				+0.3
88,048	+				-0.3
88,048	+				-1.5
88,048	+				+0.9
88,048	+				-0.4
88,048	+				-0.5
88,048	+				-0.8
88,048	+				+0.8
88,048	+				-0.7
88,048	+				-0.4
88,048	+				+0.6
88,048	+				-0.4
88,048	+				+0.2
88,048	+				-0.9
88,048	+				-0.1
88,048	+				-1.1
88,048	+				+0.6
88,048	+				-0.5
88,048	+				+0.3
88,048	+				+0.4
88,049	-				+0.0
88,049	-				-0.5
88,049	-				-1.1
88,049	-				-1.2
88,049	-				-1.0
88,049	-				+0.2
88,049	-				+0.3
88,049	-				-0.7
88,049	-				+0.3
88,049	-				-0.9
88,049	-				+0.2
88,049	-				-0.1
88,049	-				-0.7
88,049	-				-1.8
88,049	-				-0.6
88,049	-				+0.2
88,049	-				-0.8
88,049	-				-1.6
88,049	-				-1.9
88,049	-				+0.6
88,049	-				+1.6
88,049	-				-0.1
88,049	-				-0.5
88,049	-				-1.1
88,049	-				-1.1
88,049	-				-1.4
88,049	-				-0.7
88,050	+				+1.9
88,050	+				-1.2
88,051	-				-0.4
88,051	-				+1.1
88,051	-				+1.2
88,051	-				+0.6
88,088	+				-0.5
88,089	-				-0.0
88,089	-				+0.9
88,151	+				+0.2
88,151	+				-0.2
88,151	+				-0.4
88,151	+				-0.1
88,151	+				-0.2
88,151	+				-1.9
88,151	+				+0.0
88,151	+				-0.1
88,151	+				-0.3
88,151	+				+0.0
88,151	+				-0.5
88,152	-				+0.5
88,152	-				-0.5
88,152	-				-0.2
88,152	-				-0.0
88,152	-				+0.4
88,152	-				-0.9
88,152	-				-0.1
88,152	-				+0.3
88,152	-				-1.2
88,152	-				-0.4
88,152	-				-1.5
88,152	-				-0.5
88,152	-				+0.4
88,152	-				+0.4
88,152	-				-0.3
88,331	+		GFF6299	0.25	-0.7
88,331	+		GFF6299	0.25	+0.4
88,331	+		GFF6299	0.25	+1.9
88,331	+		GFF6299	0.25	+0.5
88,331	+		GFF6299	0.25	+0.6
88,331	+		GFF6299	0.25	-0.5
88,332	-		GFF6299	0.25	+1.9
88,332	-		GFF6299	0.25	-0.4
88,332	-		GFF6299	0.25	+0.1
88,332	-		GFF6299	0.25	-0.4
88,332	-		GFF6299	0.25	-0.3
88,332	-		GFF6299	0.25	-0.7
88,332	-		GFF6299	0.25	-0.6
88,332	-		GFF6299	0.25	+0.4
88,332	-		GFF6299	0.25	-0.6
88,332	-		GFF6299	0.25	+0.4
88,332	-		GFF6299	0.25	+0.1
88,454	+		GFF6299	0.37	-0.3
88,454	+		GFF6299	0.37	-0.6
88,454	+		GFF6299	0.37	+1.3
88,454	+		GFF6299	0.37	+0.9
88,454	+		GFF6299	0.37	+0.7
88,455	-		GFF6299	0.38	-0.1
88,455	-		GFF6299	0.38	-0.2
88,455	-		GFF6299	0.38	-0.0
88,455	-		GFF6299	0.38	+1.6
88,455	-		GFF6299	0.38	+0.6
88,455	-		GFF6299	0.38	-2.4
88,455	-		GFF6299	0.38	-0.0
88,455	-		GFF6299	0.38	+0.7
88,455	-		GFF6299	0.38	+1.4
88,455	-		GFF6299	0.38	+0.2
88,455	-		GFF6299	0.38	-0.1
88,505	+		GFF6299	0.43	-0.4
88,505	+		GFF6299	0.43	-1.2
88,505	+		GFF6299	0.43	-0.3
88,505	+		GFF6299	0.43	-0.2
88,505	+		GFF6299	0.43	+0.3
88,506	-		GFF6299	0.43	-0.3
88,506	-		GFF6299	0.43	-0.7
88,506	-		GFF6299	0.43	-1.8
88,506	-		GFF6299	0.43	+0.1
88,506	-		GFF6299	0.43	+0.2
88,506	-		GFF6299	0.43	-0.3
88,506	-		GFF6299	0.43	-0.1
88,506	-		GFF6299	0.43	-1.2
88,506	-		GFF6299	0.43	+0.1
88,506	-		GFF6299	0.43	-0.3
88,506	-		GFF6299	0.43	+1.3
88,506	-		GFF6299	0.43	-0.1
88,506	-		GFF6299	0.43	+0.7
88,649	+		GFF6299	0.57	-0.9
88,649	+		GFF6299	0.57	-0.0
88,649	+		GFF6299	0.57	-0.4
88,649	+		GFF6299	0.57	+0.6
88,649	+		GFF6299	0.57	+0.2
88,649	+		GFF6299	0.57	+0.5
88,650	-		GFF6299	0.57	+0.1
88,650	-		GFF6299	0.57	-0.3
88,650	-		GFF6299	0.57	+0.2
88,650	-		GFF6299	0.57	+1.0
88,730	+		GFF6299	0.66	-1.0
88,730	+		GFF6299	0.66	+0.6
88,731	-		GFF6299	0.66	-0.6
88,731	-		GFF6299	0.66	-1.8
88,731	-		GFF6299	0.66	+0.7
88,796	+		GFF6299	0.72	-0.5
88,796	+		GFF6299	0.72	-1.0
88,796	+		GFF6299	0.72	+0.7
88,796	+		GFF6299	0.72	-0.7
88,796	+		GFF6299	0.72	+0.7
88,796	+		GFF6299	0.72	+1.7
88,796	+		GFF6299	0.72	-0.1
88,797	-		GFF6299	0.72	-0.7
88,797	-		GFF6299	0.72	-0.9
88,797	-		GFF6299	0.72	-1.1
88,797	-		GFF6299	0.72	+0.1
88,797	-		GFF6299	0.72	-0.1
88,833	+		GFF6299	0.76	+0.4
88,946	+		GFF6299	0.88	-1.1
88,947	-		GFF6299	0.88	+0.1
88,947	-		GFF6299	0.88	-0.1
88,947	-		GFF6299	0.88	+0.7
88,947	-		GFF6299	0.88	+0.1
89,127	+				+0.1
89,127	+				-0.9
89,128	-				+1.4
89,568	+		GFF6300	0.42	+0.3
89,568	+		GFF6300	0.42	-1.1
89,568	+		GFF6300	0.42	-1.5
89,569	-		GFF6300	0.42	-0.8
89,569	-		GFF6300	0.42	-0.1
89,569	-		GFF6300	0.42	-1.7
89,569	-		GFF6300	0.42	-0.8
89,569	-		GFF6300	0.42	+0.3
89,569	-		GFF6300	0.42	-0.2
89,569	-		GFF6300	0.42	-0.1
89,569	-		GFF6300	0.42	-0.1
89,569	-		GFF6300	0.42	+0.9
89,569	-		GFF6300	0.42	-0.4
89,818	-		GFF6300	0.63	+0.3
89,818	-		GFF6300	0.63	+0.8
89,818	-		GFF6300	0.63	-0.0
89,818	-		GFF6300	0.63	-0.3
89,818	-		GFF6300	0.63	+0.1
89,818	-		GFF6300	0.63	-0.6
89,818	-		GFF6300	0.63	-1.1
89,818	-		GFF6300	0.63	-2.8
89,818	-		GFF6300	0.63	+0.6
89,818	-		GFF6300	0.63	+0.2
89,818	-		GFF6300	0.63	-0.5
89,818	-		GFF6300	0.63	-0.2
89,818	-		GFF6300	0.63	-0.6
89,871	+		GFF6300	0.67	-0.7
89,871	+		GFF6300	0.67	-0.6
89,871	+		GFF6300	0.67	+0.9
89,904	+		GFF6300	0.70	+0.0
89,904	+		GFF6300	0.70	-0.1
89,904	+		GFF6300	0.70	+1.2
89,904	+		GFF6300	0.70	+0.6
89,904	+		GFF6300	0.70	-1.1
89,904	+		GFF6300	0.70	-1.8
89,904	+		GFF6300	0.70	+0.5
89,904	+		GFF6300	0.70	-0.7
89,904	+		GFF6300	0.70	-0.7
89,904	+		GFF6300	0.70	+0.3
89,904	+		GFF6300	0.70	-1.5
89,904	+		GFF6300	0.70	+1.6
89,904	+		GFF6300	0.70	-0.6
89,904	+		GFF6300	0.70	-0.2
89,904	+		GFF6300	0.70	+0.0
89,904	+		GFF6300	0.70	-0.3
89,904	+		GFF6300	0.70	-0.8
89,905	-		GFF6300	0.70	-0.1
89,905	-		GFF6300	0.70	+0.9
89,905	-		GFF6300	0.70	+0.4
89,905	-		GFF6300	0.70	-0.3
89,905	-		GFF6300	0.70	-0.6
89,905	-		GFF6300	0.70	-0.4
89,905	-		GFF6300	0.70	-1.1
89,905	-		GFF6300	0.70	-0.1
89,905	-		GFF6300	0.70	-0.6
89,905	-		GFF6300	0.70	-0.5
89,905	-		GFF6300	0.70	-0.3
89,905	-		GFF6300	0.70	-0.3
89,905	-		GFF6300	0.70	-0.9
89,905	-		GFF6300	0.70	-1.2
89,905	-		GFF6300	0.70	+0.1
89,905	-		GFF6300	0.70	+0.5
89,940	+		GFF6300	0.73	-0.3
89,940	+		GFF6300	0.73	+1.1
89,941	-		GFF6300	0.73	+0.1
89,941	-		GFF6300	0.73	+0.6
89,941	-		GFF6300	0.73	-0.5