Strain Fitness in Variovorax sp. SCN45 around GFF5320

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5319 and GFF5320 overlap by 4 nucleotidesGFF5320 and GFF5321 are separated by 6 nucleotidesGFF5321 and GFF5322 overlap by 4 nucleotides GFF5319 - Type IV pilus biogenesis protein PilM, at 196,744 to 197,823 GFF5319 GFF5320 - Type IV pilus biogenesis protein PilN, at 197,820 to 198,443 GFF5320 GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321 GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663 GFF5322 Position (kb) 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1at 197.015 kb on + strand, within GFF5319at 197.015 kb on + strand, within GFF5319at 197.015 kb on + strand, within GFF5319at 197.016 kb on - strand, within GFF5319at 197.016 kb on - strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.095 kb on + strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.096 kb on - strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.272 kb on + strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.273 kb on - strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.404 kb on + strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.405 kb on - strand, within GFF5319at 197.461 kb on + strand, within GFF5319at 197.462 kb on - strand, within GFF5319at 197.462 kb on - strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.521 kb on + strand, within GFF5319at 197.522 kb on - strand, within GFF5319at 197.522 kb on - strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.623 kb on + strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.624 kb on - strand, within GFF5319at 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.779 kb on + strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.780 kb on - strandat 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.883 kb on + strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.884 kb on - strand, within GFF5320at 197.937 kb on + strand, within GFF5320at 197.937 kb on + strand, within GFF5320at 197.938 kb on - strand, within GFF5320at 197.938 kb on - strand, within GFF5320at 197.946 kb on + strand, within GFF5320at 197.946 kb on + strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 197.947 kb on - strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.159 kb on + strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.160 kb on - strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.245 kb on + strand, within GFF5320at 198.469 kb on + strandat 198.633 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.891 kb on + strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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197,015 + GFF5319 0.25 -1.3
197,015 + GFF5319 0.25 -0.7
197,015 + GFF5319 0.25 -1.3
197,016 - GFF5319 0.25 -1.9
197,016 - GFF5319 0.25 -1.2
197,095 + GFF5319 0.33 -0.1
197,095 + GFF5319 0.33 -0.3
197,095 + GFF5319 0.33 -1.5
197,095 + GFF5319 0.33 -1.5
197,095 + GFF5319 0.33 -1.1
197,095 + GFF5319 0.33 -0.9
197,095 + GFF5319 0.33 -2.4
197,095 + GFF5319 0.33 -1.8
197,095 + GFF5319 0.33 -0.7
197,095 + GFF5319 0.33 -1.0
197,095 + GFF5319 0.33 -1.6
197,095 + GFF5319 0.33 -0.1
197,095 + GFF5319 0.33 -0.6
197,095 + GFF5319 0.33 -1.2
197,095 + GFF5319 0.33 -1.3
197,095 + GFF5319 0.33 -0.1
197,095 + GFF5319 0.33 -0.6
197,096 - GFF5319 0.33 -1.7
197,096 - GFF5319 0.33 -1.3
197,096 - GFF5319 0.33 -1.6
197,096 - GFF5319 0.33 -0.8
197,096 - GFF5319 0.33 -0.8
197,096 - GFF5319 0.33 -0.6
197,096 - GFF5319 0.33 +0.4
197,096 - GFF5319 0.33 -1.8
197,096 - GFF5319 0.33 -1.3
197,096 - GFF5319 0.33 -1.3
197,096 - GFF5319 0.33 -3.0
197,096 - GFF5319 0.33 -1.4
197,096 - GFF5319 0.33 -1.6
197,096 - GFF5319 0.33 +0.7
197,096 - GFF5319 0.33 -0.9
197,096 - GFF5319 0.33 -0.4
197,096 - GFF5319 0.33 -3.1
197,272 + GFF5319 0.49 -0.0
197,272 + GFF5319 0.49 -1.9
197,272 + GFF5319 0.49 -0.4
197,272 + GFF5319 0.49 -1.3
197,272 + GFF5319 0.49 -1.1
197,272 + GFF5319 0.49 -1.0
197,272 + GFF5319 0.49 -1.3
197,272 + GFF5319 0.49 -0.7
197,272 + GFF5319 0.49 -1.6
197,273 - GFF5319 0.49 -2.4
197,273 - GFF5319 0.49 -0.6
197,273 - GFF5319 0.49 -1.3
197,273 - GFF5319 0.49 -1.0
197,273 - GFF5319 0.49 -0.8
197,273 - GFF5319 0.49 -1.5
197,273 - GFF5319 0.49 -1.0
197,273 - GFF5319 0.49 -2.1
197,273 - GFF5319 0.49 -1.2
197,273 - GFF5319 0.49 -1.1
197,273 - GFF5319 0.49 -2.7
197,273 - GFF5319 0.49 -1.9
197,404 + GFF5319 0.61 -2.0
197,404 + GFF5319 0.61 -1.5
197,404 + GFF5319 0.61 -0.6
197,404 + GFF5319 0.61 -0.3
197,404 + GFF5319 0.61 -1.1
197,404 + GFF5319 0.61 -0.5
197,404 + GFF5319 0.61 -1.6
197,404 + GFF5319 0.61 -0.4
197,405 - GFF5319 0.61 -2.2
197,405 - GFF5319 0.61 -2.3
197,405 - GFF5319 0.61 -2.5
197,405 - GFF5319 0.61 -2.2
197,405 - GFF5319 0.61 -0.2
197,405 - GFF5319 0.61 -1.0
197,405 - GFF5319 0.61 -0.7
197,461 + GFF5319 0.66 -0.4
197,462 - GFF5319 0.66 -1.1
197,462 - GFF5319 0.66 -1.3
197,521 + GFF5319 0.72 -0.3
197,521 + GFF5319 0.72 -1.4
197,521 + GFF5319 0.72 -1.0
197,522 - GFF5319 0.72 -1.1
197,522 - GFF5319 0.72 -0.8
197,623 + GFF5319 0.81 -2.0
197,623 + GFF5319 0.81 -2.3
197,623 + GFF5319 0.81 -1.7
197,623 + GFF5319 0.81 -1.3
197,623 + GFF5319 0.81 -0.0
197,623 + GFF5319 0.81 -1.1
197,623 + GFF5319 0.81 -0.3
197,623 + GFF5319 0.81 -1.7
197,623 + GFF5319 0.81 -0.7
197,623 + GFF5319 0.81 -1.0
197,623 + GFF5319 0.81 -1.3
197,623 + GFF5319 0.81 -0.2
197,623 + GFF5319 0.81 -1.4
197,623 + GFF5319 0.81 -0.6
197,623 + GFF5319 0.81 -1.3
197,623 + GFF5319 0.81 -0.6
197,623 + GFF5319 0.81 -0.0
197,623 + GFF5319 0.81 +0.1
197,623 + GFF5319 0.81 -1.6
197,624 - GFF5319 0.81 +0.3
197,624 - GFF5319 0.81 -1.4
197,624 - GFF5319 0.81 -0.8
197,624 - GFF5319 0.81 -0.9
197,624 - GFF5319 0.81 -0.3
197,624 - GFF5319 0.81 -2.1
197,624 - GFF5319 0.81 -0.2
197,624 - GFF5319 0.81 -0.9
197,624 - GFF5319 0.81 -1.5
197,624 - GFF5319 0.81 -0.9
197,624 - GFF5319 0.81 -1.4
197,624 - GFF5319 0.81 -2.1
197,779 + -1.0
197,779 + -1.5
197,779 + +0.3
197,779 + -1.2
197,779 + -0.1
197,780 - -1.2
197,780 - -1.1
197,780 - -2.2
197,780 - -1.3
197,780 - +0.9
197,780 - -0.5
197,883 + GFF5320 0.10 -1.3
197,883 + GFF5320 0.10 -1.2
197,883 + GFF5320 0.10 -1.8
197,883 + GFF5320 0.10 -0.7
197,883 + GFF5320 0.10 -1.4
197,883 + GFF5320 0.10 -1.2
197,883 + GFF5320 0.10 +0.4
197,883 + GFF5320 0.10 -1.2
197,883 + GFF5320 0.10 +0.5
197,884 - GFF5320 0.10 -2.4
197,884 - GFF5320 0.10 -0.4
197,884 - GFF5320 0.10 -0.1
197,884 - GFF5320 0.10 -1.9
197,884 - GFF5320 0.10 -0.7
197,884 - GFF5320 0.10 -2.1
197,884 - GFF5320 0.10 -2.2
197,884 - GFF5320 0.10 +0.7
197,884 - GFF5320 0.10 +0.4
197,937 + GFF5320 0.19 -2.0
197,937 + GFF5320 0.19 -1.2
197,938 - GFF5320 0.19 -0.9
197,938 - GFF5320 0.19 -1.6
197,946 + GFF5320 0.20 -1.4
197,946 + GFF5320 0.20 -1.2
197,947 - GFF5320 0.20 -0.4
197,947 - GFF5320 0.20 -2.9
197,947 - GFF5320 0.20 +0.4
198,159 + GFF5320 0.54 -2.3
198,159 + GFF5320 0.54 +0.6
198,159 + GFF5320 0.54 -1.1
198,159 + GFF5320 0.54 -1.1
198,159 + GFF5320 0.54 -1.8
198,159 + GFF5320 0.54 -1.2
198,160 - GFF5320 0.54 -1.9
198,160 - GFF5320 0.54 -0.5
198,245 + GFF5320 0.68 -0.6
198,245 + GFF5320 0.68 -2.3
198,469 + -2.0
198,633 + GFF5321 0.27 -0.9
198,687 + GFF5321 0.35 -2.3
198,687 + GFF5321 0.35 -1.5
198,688 - GFF5321 0.35 +1.0
198,688 - GFF5321 0.35 -1.2
198,688 - GFF5321 0.35 -1.1
198,756 + GFF5321 0.45 -0.9
198,756 + GFF5321 0.45 -2.5
198,756 + GFF5321 0.45 -0.9
198,756 + GFF5321 0.45 -1.4
198,756 + GFF5321 0.45 -1.7
198,756 + GFF5321 0.45 -1.1
198,757 - GFF5321 0.45 -1.9
198,757 - GFF5321 0.45 -1.0
198,757 - GFF5321 0.45 -1.8
198,757 - GFF5321 0.45 -1.5
198,757 - GFF5321 0.45 -0.8
198,757 - GFF5321 0.45 -2.4
198,757 - GFF5321 0.45 -2.0
198,757 - GFF5321 0.45 -1.3
198,757 - GFF5321 0.45 -1.7
198,891 + GFF5321 0.65 -0.8
198,892 - GFF5321 0.65 -1.1
198,892 - GFF5321 0.65 -0.7
198,892 - GFF5321 0.65 -1.5
198,892 - GFF5321 0.65 -1.6
198,892 - GFF5321 0.65 -0.6
198,892 - GFF5321 0.65 -0.6
198,892 - GFF5321 0.65 -1.1
198,892 - GFF5321 0.65 -1.3
198,892 - GFF5321 0.65 -0.9
198,894 + GFF5321 0.65 -0.4
198,894 + GFF5321 0.65 -0.9
198,894 + GFF5321 0.65 -0.6
198,894 + GFF5321 0.65 -1.6
198,894 + GFF5321 0.65 -1.3
198,894 + GFF5321 0.65 -1.2
198,894 + GFF5321 0.65 -1.3
198,894 + GFF5321 0.65 -1.4
198,894 + GFF5321 0.65 -1.6
198,895 - GFF5321 0.66 -0.5
198,895 - GFF5321 0.66 +0.3
198,895 - GFF5321 0.66 -1.1
198,895 - GFF5321 0.66 -2.2
198,895 - GFF5321 0.66 -3.0
198,895 - GFF5321 0.66 -1.7
198,895 - GFF5321 0.66 -0.7
198,895 - GFF5321 0.66 -0.9
198,895 - GFF5321 0.66 -0.6
198,933 + GFF5321 0.71 -1.3
198,933 + GFF5321 0.71 -0.7
198,933 + GFF5321 0.71 -1.4
198,933 + GFF5321 0.71 -0.3
198,933 + GFF5321 0.71 -1.5
198,934 - GFF5321 0.71 -1.6
198,934 - GFF5321 0.71 -1.2
198,934 - GFF5321 0.71 -1.5
199,289 + GFF5322 0.31 -1.2
199,289 + GFF5322 0.31 -1.4
199,289 + GFF5322 0.31 -2.2
199,289 + GFF5322 0.31 -1.6
199,289 + GFF5322 0.31 -1.0
199,289 + GFF5322 0.31 -0.5
199,289 + GFF5322 0.31 -1.0
199,289 + GFF5322 0.31 -1.3
199,289 + GFF5322 0.31 +0.1
199,290 - GFF5322 0.31 -2.1
199,290 - GFF5322 0.31 -1.1
199,290 - GFF5322 0.31 -1.3
199,290 - GFF5322 0.31 -0.4
199,290 - GFF5322 0.31 -0.7

Or see this region's nucleotide sequence