Strain Fitness in Variovorax sp. SCN45 around GFF5296

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5295 and GFF5296 are separated by 33 nucleotidesGFF5296 and GFF5297 overlap by 4 nucleotidesGFF5297 and GFF5298 are separated by 171 nucleotides GFF5295 - Ferrichrome-iron receptor, at 167,828 to 169,948 GFF5295 GFF5296 - putative iron-regulated membrane protein, at 169,982 to 171,154 GFF5296 GFF5297 - hypothetical protein, at 171,151 to 171,345 GFF5297 GFF5298 - FIG01204242: hypothetical protein, at 171,517 to 173,733 GFF5298 Position (kb) 169 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2 3at 169.055 kb on + strand, within GFF5295at 169.055 kb on + strand, within GFF5295at 169.056 kb on - strand, within GFF5295at 169.056 kb on - strand, within GFF5295at 169.073 kb on + strand, within GFF5295at 169.098 kb on - strand, within GFF5295at 169.157 kb on + strand, within GFF5295at 169.158 kb on - strand, within GFF5295at 169.158 kb on - strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.289 kb on + strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.290 kb on - strand, within GFF5295at 169.316 kb on + strand, within GFF5295at 169.317 kb on - strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.325 kb on + strand, within GFF5295at 169.326 kb on - strand, within GFF5295at 169.326 kb on - strand, within GFF5295at 169.418 kb on + strand, within GFF5295at 169.418 kb on + strand, within GFF5295at 169.419 kb on - strand, within GFF5295at 169.511 kb on + strand, within GFF5295at 169.512 kb on - strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.601 kb on + strand, within GFF5295at 169.602 kb on - strand, within GFF5295at 169.670 kb on + strand, within GFF5295at 169.671 kb on - strand, within GFF5295at 169.671 kb on - strand, within GFF5295at 169.724 kb on + strand, within GFF5295at 169.724 kb on + strand, within GFF5295at 169.829 kb on + strandat 169.865 kb on + strandat 169.866 kb on - strandat 169.866 kb on - strandat 169.937 kb on + strandat 169.937 kb on + strandat 169.938 kb on - strandat 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.366 kb on + strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.367 kb on - strand, within GFF5296at 170.477 kb on + strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.646 kb on - strand, within GFF5296at 170.654 kb on + strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.655 kb on - strand, within GFF5296at 170.684 kb on + strand, within GFF5296at 170.685 kb on - strand, within GFF5296at 170.930 kb on + strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.931 kb on - strand, within GFF5296at 170.976 kb on - strand, within GFF5296at 171.050 kb on + strandat 171.051 kb on - strandat 171.051 kb on - strandat 171.343 kb on + strandat 171.413 kb on + strandat 171.414 kb on - strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.516 kb on + strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.517 kb on - strandat 171.576 kb on - strandat 171.576 kb on - strandat 171.736 kb on + strandat 171.983 kb on - strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.994 kb on + strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 171.995 kb on - strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.072 kb on + strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.073 kb on - strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.120 kb on + strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298at 172.121 kb on - strand, within GFF5298

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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169,055 + GFF5295 0.58 +0.3
169,055 + GFF5295 0.58 +0.6
169,056 - GFF5295 0.58 -0.4
169,056 - GFF5295 0.58 -0.1
169,073 + GFF5295 0.59 +0.1
169,098 - GFF5295 0.60 -0.6
169,157 + GFF5295 0.63 -1.5
169,158 - GFF5295 0.63 -1.3
169,158 - GFF5295 0.63 -1.2
169,289 + GFF5295 0.69 -0.1
169,289 + GFF5295 0.69 +0.3
169,289 + GFF5295 0.69 +0.1
169,289 + GFF5295 0.69 -0.6
169,289 + GFF5295 0.69 +0.1
169,289 + GFF5295 0.69 -0.0
169,290 - GFF5295 0.69 -1.3
169,290 - GFF5295 0.69 -0.3
169,290 - GFF5295 0.69 -0.4
169,290 - GFF5295 0.69 +0.4
169,290 - GFF5295 0.69 -0.2
169,316 + GFF5295 0.70 +0.6
169,317 - GFF5295 0.70 +0.7
169,325 + GFF5295 0.71 -0.6
169,325 + GFF5295 0.71 -0.4
169,325 + GFF5295 0.71 +1.7
169,326 - GFF5295 0.71 +0.6
169,326 - GFF5295 0.71 -0.7
169,418 + GFF5295 0.75 +0.2
169,418 + GFF5295 0.75 -0.3
169,419 - GFF5295 0.75 +1.7
169,511 + GFF5295 0.79 +0.3
169,512 - GFF5295 0.79 -1.4
169,601 + GFF5295 0.84 +0.8
169,601 + GFF5295 0.84 +0.5
169,601 + GFF5295 0.84 +0.3
169,601 + GFF5295 0.84 -0.2
169,602 - GFF5295 0.84 -0.2
169,670 + GFF5295 0.87 +0.0
169,671 - GFF5295 0.87 +0.4
169,671 - GFF5295 0.87 -0.6
169,724 + GFF5295 0.89 +0.3
169,724 + GFF5295 0.89 -0.7
169,829 + -0.8
169,865 + -0.9
169,866 - -0.3
169,866 - -0.3
169,937 + +0.5
169,937 + +0.9
169,938 - -0.3
170,366 + GFF5296 0.33 -0.3
170,366 + GFF5296 0.33 +0.1
170,366 + GFF5296 0.33 +1.0
170,366 + GFF5296 0.33 -0.1
170,366 + GFF5296 0.33 -0.5
170,366 + GFF5296 0.33 +3.0
170,366 + GFF5296 0.33 +0.1
170,366 + GFF5296 0.33 +1.1
170,366 + GFF5296 0.33 +0.4
170,366 + GFF5296 0.33 +0.0
170,366 + GFF5296 0.33 -0.6
170,366 + GFF5296 0.33 -0.2
170,366 + GFF5296 0.33 -0.9
170,367 - GFF5296 0.33 -0.3
170,367 - GFF5296 0.33 -0.5
170,367 - GFF5296 0.33 -0.2
170,367 - GFF5296 0.33 -0.5
170,367 - GFF5296 0.33 +1.3
170,367 - GFF5296 0.33 +2.0
170,477 + GFF5296 0.42 +1.9
170,646 - GFF5296 0.57 +0.1
170,646 - GFF5296 0.57 +0.7
170,646 - GFF5296 0.57 +1.2
170,646 - GFF5296 0.57 +0.9
170,654 + GFF5296 0.57 +0.4
170,655 - GFF5296 0.57 -0.3
170,655 - GFF5296 0.57 -0.5
170,684 + GFF5296 0.60 -0.5
170,685 - GFF5296 0.60 -0.4
170,930 + GFF5296 0.81 +1.7
170,931 - GFF5296 0.81 -0.7
170,931 - GFF5296 0.81 -0.5
170,976 - GFF5296 0.85 -0.3
171,050 + -0.9
171,051 - +0.2
171,051 - +3.3
171,343 + -0.7
171,413 + -1.1
171,414 - +0.1
171,516 + -0.7
171,516 + -0.6
171,516 + +0.1
171,516 + +1.4
171,516 + +0.1
171,516 + -0.2
171,517 - -0.7
171,517 - +0.6
171,517 - +0.8
171,517 - +0.1
171,517 - -0.4
171,517 - -0.1
171,576 - +0.6
171,576 - +0.4
171,736 + +2.7
171,983 - GFF5298 0.21 +0.1
171,994 + GFF5298 0.22 +1.2
171,994 + GFF5298 0.22 -0.5
171,994 + GFF5298 0.22 -0.2
171,994 + GFF5298 0.22 -0.4
171,995 - GFF5298 0.22 -1.9
171,995 - GFF5298 0.22 -0.2
172,072 + GFF5298 0.25 -0.0
172,072 + GFF5298 0.25 -0.9
172,073 - GFF5298 0.25 -0.1
172,073 - GFF5298 0.25 -0.7
172,120 + GFF5298 0.27 -1.1
172,120 + GFF5298 0.27 -2.0
172,121 - GFF5298 0.27 +2.1
172,121 - GFF5298 0.27 +0.1
172,121 - GFF5298 0.27 -0.4
172,121 - GFF5298 0.27 -0.6
172,121 - GFF5298 0.27 -1.7

Or see this region's nucleotide sequence