Strain Fitness in Variovorax sp. SCN45 around GFF5258

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5257 and GFF5258 are separated by 94 nucleotidesGFF5258 and GFF5259 overlap by 1 nucleotides GFF5257 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 122,543 to 123,580 GFF5257 GFF5258 - hypothetical protein, at 123,675 to 123,854 GFF5258 GFF5259 - Na+/solute symporter, at 123,854 to 125,359 GFF5259 Position (kb) 123 124Strain fitness (log2 ratio) -2 -1 0 1 2at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.795 kb on + strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.796 kb on - strand, within GFF5257at 122.909 kb on + strand, within GFF5257at 122.910 kb on - strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.059 kb on + strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.060 kb on - strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.230 kb on + strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.231 kb on - strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.293 kb on + strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.294 kb on - strand, within GFF5257at 123.356 kb on + strand, within GFF5257at 123.357 kb on - strand, within GFF5257at 123.357 kb on - strand, within GFF5257at 123.578 kb on + strandat 123.592 kb on - strandat 123.627 kb on + strandat 123.627 kb on + strandat 123.627 kb on + strandat 123.627 kb on + strandat 123.628 kb on - strandat 123.628 kb on - strandat 123.629 kb on + strandat 123.629 kb on + strandat 123.629 kb on + strandat 123.629 kb on + strandat 123.630 kb on - strandat 123.630 kb on - strandat 123.630 kb on - strandat 123.726 kb on + strand, within GFF5258at 123.727 kb on - strand, within GFF5258at 123.768 kb on + strand, within GFF5258at 123.768 kb on + strand, within GFF5258at 123.768 kb on + strand, within GFF5258at 123.768 kb on + strand, within GFF5258at 123.768 kb on + strand, within GFF5258at 123.769 kb on - strand, within GFF5258at 123.769 kb on - strand, within GFF5258at 123.769 kb on - strand, within GFF5258at 123.774 kb on + strand, within GFF5258at 123.774 kb on + strand, within GFF5258at 123.774 kb on + strand, within GFF5258at 123.774 kb on + strand, within GFF5258at 123.775 kb on - strand, within GFF5258at 123.775 kb on - strand, within GFF5258at 123.775 kb on - strand, within GFF5258at 123.823 kb on - strand, within GFF5258at 123.834 kb on + strand, within GFF5258at 123.835 kb on - strand, within GFF5258at 124.049 kb on + strand, within GFF5259at 124.050 kb on - strand, within GFF5259at 124.050 kb on - strand, within GFF5259at 124.050 kb on - strand, within GFF5259at 124.058 kb on + strand, within GFF5259at 124.058 kb on + strand, within GFF5259at 124.059 kb on - strand, within GFF5259at 124.059 kb on - strand, within GFF5259at 124.059 kb on - strand, within GFF5259at 124.059 kb on - strand, within GFF5259at 124.088 kb on + strand, within GFF5259at 124.089 kb on - strand, within GFF5259at 124.103 kb on + strand, within GFF5259at 124.103 kb on + strand, within GFF5259at 124.103 kb on + strand, within GFF5259at 124.124 kb on + strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.125 kb on - strand, within GFF5259at 124.220 kb on + strand, within GFF5259at 124.221 kb on - strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.289 kb on + strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.290 kb on - strand, within GFF5259at 124.388 kb on + strand, within GFF5259at 124.388 kb on + strand, within GFF5259at 124.388 kb on + strand, within GFF5259at 124.389 kb on - strand, within GFF5259at 124.389 kb on - strand, within GFF5259at 124.394 kb on + strand, within GFF5259at 124.394 kb on + strand, within GFF5259at 124.394 kb on + strand, within GFF5259at 124.395 kb on - strand, within GFF5259at 124.395 kb on - strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.451 kb on + strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.452 kb on - strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.583 kb on + strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.584 kb on - strand, within GFF5259at 124.592 kb on + strand, within GFF5259at 124.592 kb on + strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.593 kb on - strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.634 kb on + strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.635 kb on - strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.712 kb on + strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.713 kb on - strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259at 124.748 kb on + strand, within GFF5259

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
122,795 + GFF5257 0.24 +0.1
122,795 + GFF5257 0.24 -1.3
122,795 + GFF5257 0.24 -0.8
122,795 + GFF5257 0.24 +0.6
122,795 + GFF5257 0.24 -0.6
122,796 - GFF5257 0.24 +0.3
122,796 - GFF5257 0.24 +2.5
122,796 - GFF5257 0.24 -1.5
122,796 - GFF5257 0.24 -0.6
122,909 + GFF5257 0.35 +0.5
122,910 - GFF5257 0.35 -0.2
123,059 + GFF5257 0.50 +0.3
123,059 + GFF5257 0.50 -0.9
123,059 + GFF5257 0.50 -1.7
123,060 - GFF5257 0.50 -0.3
123,060 - GFF5257 0.50 +0.0
123,060 - GFF5257 0.50 -1.5
123,060 - GFF5257 0.50 +1.7
123,230 + GFF5257 0.66 +0.3
123,230 + GFF5257 0.66 +0.6
123,230 + GFF5257 0.66 +1.1
123,231 - GFF5257 0.66 -0.6
123,231 - GFF5257 0.66 -0.7
123,231 - GFF5257 0.66 -0.1
123,231 - GFF5257 0.66 -0.3
123,231 - GFF5257 0.66 -0.4
123,231 - GFF5257 0.66 -2.3
123,293 + GFF5257 0.72 -1.7
123,293 + GFF5257 0.72 +0.2
123,293 + GFF5257 0.72 +0.5
123,293 + GFF5257 0.72 -0.1
123,293 + GFF5257 0.72 -0.5
123,293 + GFF5257 0.72 +0.7
123,294 - GFF5257 0.72 -0.3
123,294 - GFF5257 0.72 -1.1
123,294 - GFF5257 0.72 +0.4
123,294 - GFF5257 0.72 -0.5
123,294 - GFF5257 0.72 -0.6
123,294 - GFF5257 0.72 -0.9
123,294 - GFF5257 0.72 +0.1
123,356 + GFF5257 0.78 -1.3
123,357 - GFF5257 0.78 +0.9
123,357 - GFF5257 0.78 -2.2
123,578 + +0.3
123,592 - -0.3
123,627 + -0.6
123,627 + -0.3
123,627 + +0.2
123,627 + +1.1
123,628 - -0.2
123,628 - -0.3
123,629 + -0.7
123,629 + -0.2
123,629 + +0.1
123,629 + -0.3
123,630 - +0.5
123,630 - -0.4
123,630 - +0.6
123,726 + GFF5258 0.28 +0.1
123,727 - GFF5258 0.29 +0.1
123,768 + GFF5258 0.52 -0.2
123,768 + GFF5258 0.52 +0.4
123,768 + GFF5258 0.52 +1.1
123,768 + GFF5258 0.52 -0.0
123,768 + GFF5258 0.52 -0.6
123,769 - GFF5258 0.52 -0.0
123,769 - GFF5258 0.52 +1.1
123,769 - GFF5258 0.52 +0.4
123,774 + GFF5258 0.55 -0.4
123,774 + GFF5258 0.55 -0.5
123,774 + GFF5258 0.55 +0.3
123,774 + GFF5258 0.55 +2.0
123,775 - GFF5258 0.56 -0.1
123,775 - GFF5258 0.56 -0.0
123,775 - GFF5258 0.56 +0.1
123,823 - GFF5258 0.82 +0.4
123,834 + GFF5258 0.88 -0.7
123,835 - GFF5258 0.89 -1.3
124,049 + GFF5259 0.13 -0.2
124,050 - GFF5259 0.13 -0.1
124,050 - GFF5259 0.13 +0.7
124,050 - GFF5259 0.13 +0.2
124,058 + GFF5259 0.14 +0.3
124,058 + GFF5259 0.14 -0.8
124,059 - GFF5259 0.14 +0.6
124,059 - GFF5259 0.14 +0.7
124,059 - GFF5259 0.14 +0.5
124,059 - GFF5259 0.14 -0.9
124,088 + GFF5259 0.16 +0.2
124,089 - GFF5259 0.16 +0.4
124,103 + GFF5259 0.17 +0.0
124,103 + GFF5259 0.17 -0.9
124,103 + GFF5259 0.17 +0.1
124,124 + GFF5259 0.18 -1.4
124,125 - GFF5259 0.18 +0.2
124,125 - GFF5259 0.18 -0.5
124,125 - GFF5259 0.18 -0.6
124,125 - GFF5259 0.18 -0.8
124,125 - GFF5259 0.18 -0.0
124,125 - GFF5259 0.18 +0.4
124,220 + GFF5259 0.24 +1.4
124,221 - GFF5259 0.24 +0.4
124,289 + GFF5259 0.29 +0.9
124,289 + GFF5259 0.29 -0.3
124,289 + GFF5259 0.29 -0.2
124,289 + GFF5259 0.29 -1.0
124,289 + GFF5259 0.29 -0.6
124,289 + GFF5259 0.29 +0.8
124,290 - GFF5259 0.29 +0.1
124,290 - GFF5259 0.29 -0.4
124,290 - GFF5259 0.29 -0.2
124,290 - GFF5259 0.29 +0.3
124,290 - GFF5259 0.29 -1.7
124,290 - GFF5259 0.29 -0.1
124,290 - GFF5259 0.29 -0.2
124,290 - GFF5259 0.29 +0.5
124,388 + GFF5259 0.35 -0.9
124,388 + GFF5259 0.35 -0.1
124,388 + GFF5259 0.35 +0.1
124,389 - GFF5259 0.36 -1.9
124,389 - GFF5259 0.36 +0.5
124,394 + GFF5259 0.36 -0.0
124,394 + GFF5259 0.36 +0.1
124,394 + GFF5259 0.36 +0.3
124,395 - GFF5259 0.36 -0.3
124,395 - GFF5259 0.36 -0.1
124,451 + GFF5259 0.40 +0.4
124,451 + GFF5259 0.40 -0.6
124,451 + GFF5259 0.40 -0.0
124,451 + GFF5259 0.40 -0.6
124,451 + GFF5259 0.40 -0.1
124,452 - GFF5259 0.40 -0.4
124,452 - GFF5259 0.40 -0.0
124,452 - GFF5259 0.40 -0.4
124,452 - GFF5259 0.40 +0.5
124,452 - GFF5259 0.40 -0.1
124,452 - GFF5259 0.40 -0.4
124,452 - GFF5259 0.40 -0.7
124,452 - GFF5259 0.40 -0.5
124,452 - GFF5259 0.40 +0.6
124,452 - GFF5259 0.40 -0.5
124,452 - GFF5259 0.40 -2.2
124,452 - GFF5259 0.40 -0.3
124,452 - GFF5259 0.40 +0.0
124,583 + GFF5259 0.48 -0.5
124,583 + GFF5259 0.48 +1.1
124,583 + GFF5259 0.48 -0.9
124,584 - GFF5259 0.48 +0.1
124,584 - GFF5259 0.48 -1.7
124,584 - GFF5259 0.48 +0.0
124,584 - GFF5259 0.48 -0.1
124,592 + GFF5259 0.49 -0.0
124,592 + GFF5259 0.49 +0.4
124,593 - GFF5259 0.49 -0.1
124,593 - GFF5259 0.49 +1.1
124,593 - GFF5259 0.49 -0.3
124,593 - GFF5259 0.49 +1.3
124,634 + GFF5259 0.52 +1.6
124,634 + GFF5259 0.52 -1.6
124,634 + GFF5259 0.52 +1.7
124,635 - GFF5259 0.52 +0.3
124,635 - GFF5259 0.52 +0.6
124,635 - GFF5259 0.52 -0.3
124,712 + GFF5259 0.57 -0.7
124,712 + GFF5259 0.57 -0.3
124,712 + GFF5259 0.57 +0.1
124,713 - GFF5259 0.57 -0.6
124,713 - GFF5259 0.57 -0.8
124,713 - GFF5259 0.57 -0.2
124,713 - GFF5259 0.57 -0.8
124,713 - GFF5259 0.57 -1.1
124,748 + GFF5259 0.59 -0.4
124,748 + GFF5259 0.59 -0.4
124,748 + GFF5259 0.59 +0.3
124,748 + GFF5259 0.59 -0.8
124,748 + GFF5259 0.59 -0.0
124,748 + GFF5259 0.59 +1.2
124,748 + GFF5259 0.59 +0.3
124,748 + GFF5259 0.59 +0.1

Or see this region's nucleotide sequence