Strain Fitness in Variovorax sp. SCN45 around GFF4805

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4803 and GFF4804 overlap by 4 nucleotidesGFF4804 and GFF4805 are separated by 45 nucleotidesGFF4805 and GFF4806 overlap by 4 nucleotidesGFF4806 and GFF4807 are separated by 27 nucleotides GFF4803 - N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28), at 173,339 to 174,829 GFF4803 GFF4804 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaE, at 174,826 to 175,383 GFF4804 GFF4805 - Epoxyqueuosine reductase (EC 1.17.99.6) QueG, at 175,429 to 176,391 GFF4805 GFF4806 - Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family, at 176,388 to 176,789 GFF4806 GFF4807 - Uncharacterized GST-like protein yncG, at 176,817 to 177,503 GFF4807 Position (kb) 175 176 177Strain fitness (log2 ratio) -2 -1 0 1 2at 174.441 kb on + strand, within GFF4803at 174.441 kb on + strand, within GFF4803at 174.442 kb on - strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.552 kb on + strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.553 kb on - strand, within GFF4803at 174.554 kb on - strand, within GFF4803at 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.702 kb on + strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 174.703 kb on - strandat 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.306 kb on + strand, within GFF4804at 175.348 kb on - strandat 175.348 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.407 kb on - strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.468 kb on + strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.469 kb on - strandat 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.552 kb on + strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.553 kb on - strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.636 kb on + strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.637 kb on - strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.654 kb on + strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.655 kb on - strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.858 kb on + strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.859 kb on - strand, within GFF4805at 175.988 kb on - strand, within GFF4805at 175.990 kb on + strand, within GFF4805at 175.991 kb on - strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.056 kb on + strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.057 kb on - strand, within GFF4805at 176.058 kb on - strand, within GFF4805at 176.389 kb on + strandat 176.389 kb on + strandat 176.389 kb on + strandat 176.390 kb on - strandat 176.390 kb on - strandat 176.390 kb on - strandat 176.390 kb on - strandat 176.390 kb on - strandat 176.569 kb on + strand, within GFF4806at 176.569 kb on + strand, within GFF4806at 176.570 kb on - strand, within GFF4806at 176.570 kb on - strand, within GFF4806at 176.665 kb on + strand, within GFF4806at 176.746 kb on + strand, within GFF4806at 176.746 kb on + strand, within GFF4806at 176.747 kb on - strand, within GFF4806at 176.747 kb on - strand, within GFF4806at 176.747 kb on - strand, within GFF4806at 176.800 kb on - strandat 176.818 kb on + strandat 176.819 kb on - strandat 176.819 kb on - strandat 176.819 kb on - strandat 176.819 kb on - strandat 176.935 kb on + strand, within GFF4807at 176.980 kb on + strand, within GFF4807at 176.980 kb on + strand, within GFF4807at 176.980 kb on + strand, within GFF4807at 176.981 kb on - strand, within GFF4807at 176.981 kb on - strand, within GFF4807at 176.981 kb on - strand, within GFF4807at 176.981 kb on - strand, within GFF4807at 177.016 kb on + strand, within GFF4807at 177.157 kb on + strand, within GFF4807at 177.157 kb on + strand, within GFF4807at 177.157 kb on + strand, within GFF4807at 177.157 kb on + strand, within GFF4807at 177.157 kb on + strand, within GFF4807at 177.158 kb on - strand, within GFF4807at 177.158 kb on - strand, within GFF4807at 177.175 kb on + strand, within GFF4807at 177.175 kb on + strand, within GFF4807at 177.194 kb on - strand, within GFF4807at 177.309 kb on + strand, within GFF4807at 177.309 kb on + strand, within GFF4807at 177.310 kb on - strand, within GFF4807

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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174,441 + GFF4803 0.74 +0.2
174,441 + GFF4803 0.74 -0.2
174,442 - GFF4803 0.74 +0.4
174,552 + GFF4803 0.81 -0.2
174,552 + GFF4803 0.81 -0.0
174,552 + GFF4803 0.81 +0.4
174,552 + GFF4803 0.81 +0.8
174,552 + GFF4803 0.81 +0.4
174,552 + GFF4803 0.81 -0.5
174,553 - GFF4803 0.81 +1.6
174,553 - GFF4803 0.81 -0.5
174,553 - GFF4803 0.81 +0.9
174,553 - GFF4803 0.81 +0.4
174,553 - GFF4803 0.81 +1.2
174,553 - GFF4803 0.81 +0.0
174,553 - GFF4803 0.81 -0.6
174,554 - GFF4803 0.81 -0.7
174,702 + -1.2
174,702 + -0.4
174,702 + -1.1
174,702 + +0.7
174,703 - +0.1
174,703 - +0.5
174,703 - -1.9
174,703 - +0.2
175,306 + GFF4804 0.86 -0.3
175,306 + GFF4804 0.86 +1.0
175,306 + GFF4804 0.86 +0.0
175,348 - +0.7
175,348 - +0.7
175,407 - -0.2
175,407 - -2.2
175,407 - +1.3
175,468 + +0.2
175,468 + -0.6
175,468 + -0.4
175,468 + +0.3
175,468 + -0.1
175,468 + +0.2
175,468 + -0.4
175,468 + -1.2
175,468 + -0.3
175,468 + +0.1
175,468 + -0.4
175,468 + -0.4
175,468 + +0.2
175,468 + -2.0
175,468 + -0.1
175,469 - -0.1
175,469 - +0.2
175,469 - -0.0
175,552 + GFF4805 0.13 -0.9
175,552 + GFF4805 0.13 +0.2
175,552 + GFF4805 0.13 -0.4
175,552 + GFF4805 0.13 -0.7
175,552 + GFF4805 0.13 +0.4
175,553 - GFF4805 0.13 -0.8
175,553 - GFF4805 0.13 -0.6
175,553 - GFF4805 0.13 +0.5
175,553 - GFF4805 0.13 +0.7
175,553 - GFF4805 0.13 -0.9
175,553 - GFF4805 0.13 -0.3
175,636 + GFF4805 0.21 +0.6
175,636 + GFF4805 0.21 +1.1
175,636 + GFF4805 0.21 -0.9
175,637 - GFF4805 0.22 -0.6
175,637 - GFF4805 0.22 +0.1
175,637 - GFF4805 0.22 +0.5
175,637 - GFF4805 0.22 -0.9
175,637 - GFF4805 0.22 -1.5
175,637 - GFF4805 0.22 -0.0
175,637 - GFF4805 0.22 +1.1
175,637 - GFF4805 0.22 -0.7
175,637 - GFF4805 0.22 -0.5
175,637 - GFF4805 0.22 -0.4
175,637 - GFF4805 0.22 -1.1
175,637 - GFF4805 0.22 +2.0
175,637 - GFF4805 0.22 -1.3
175,654 + GFF4805 0.23 +0.2
175,654 + GFF4805 0.23 +0.2
175,654 + GFF4805 0.23 -0.2
175,654 + GFF4805 0.23 -0.2
175,655 - GFF4805 0.23 -0.1
175,655 - GFF4805 0.23 -0.4
175,655 - GFF4805 0.23 -0.9
175,655 - GFF4805 0.23 +0.8
175,655 - GFF4805 0.23 +0.1
175,655 - GFF4805 0.23 -0.6
175,858 + GFF4805 0.45 -0.2
175,858 + GFF4805 0.45 -2.0
175,858 + GFF4805 0.45 -2.2
175,858 + GFF4805 0.45 +0.3
175,858 + GFF4805 0.45 -1.0
175,858 + GFF4805 0.45 -0.6
175,858 + GFF4805 0.45 -0.6
175,859 - GFF4805 0.45 -0.2
175,859 - GFF4805 0.45 -0.1
175,988 - GFF4805 0.58 -0.8
175,990 + GFF4805 0.58 -0.4
175,991 - GFF4805 0.58 -0.9
176,056 + GFF4805 0.65 -0.6
176,056 + GFF4805 0.65 +0.1
176,056 + GFF4805 0.65 -0.5
176,056 + GFF4805 0.65 -0.8
176,056 + GFF4805 0.65 -0.0
176,057 - GFF4805 0.65 -0.1
176,057 - GFF4805 0.65 +0.1
176,057 - GFF4805 0.65 -0.5
176,058 - GFF4805 0.65 +0.4
176,389 + -0.8
176,389 + +2.0
176,389 + -0.4
176,390 - -0.8
176,390 - +0.1
176,390 - -1.2
176,390 - -0.0
176,390 - -0.8
176,569 + GFF4806 0.45 +0.7
176,569 + GFF4806 0.45 +0.1
176,570 - GFF4806 0.45 -0.9
176,570 - GFF4806 0.45 -0.4
176,665 + GFF4806 0.69 -0.6
176,746 + GFF4806 0.89 +0.0
176,746 + GFF4806 0.89 -0.8
176,747 - GFF4806 0.89 +0.1
176,747 - GFF4806 0.89 -1.3
176,747 - GFF4806 0.89 -1.8
176,800 - -1.4
176,818 + +0.6
176,819 - -0.4
176,819 - -1.5
176,819 - -0.2
176,819 - +1.2
176,935 + GFF4807 0.17 -0.3
176,980 + GFF4807 0.24 -0.1
176,980 + GFF4807 0.24 -0.8
176,980 + GFF4807 0.24 +0.2
176,981 - GFF4807 0.24 +0.9
176,981 - GFF4807 0.24 -0.1
176,981 - GFF4807 0.24 -1.3
176,981 - GFF4807 0.24 +0.4
177,016 + GFF4807 0.29 -0.8
177,157 + GFF4807 0.49 -0.4
177,157 + GFF4807 0.49 -0.4
177,157 + GFF4807 0.49 +0.1
177,157 + GFF4807 0.49 +0.6
177,157 + GFF4807 0.49 -0.2
177,158 - GFF4807 0.50 -0.4
177,158 - GFF4807 0.50 -1.1
177,175 + GFF4807 0.52 +0.7
177,175 + GFF4807 0.52 -0.8
177,194 - GFF4807 0.55 -0.0
177,309 + GFF4807 0.72 -1.1
177,309 + GFF4807 0.72 +0.3
177,310 - GFF4807 0.72 +0.2

Or see this region's nucleotide sequence