Strain Fitness in Variovorax sp. SCN45 around GFF3477

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
298,045	+		GFF3476	0.56	+0.5
298,046	-		GFF3476	0.56	-0.6
298,112	-		GFF3476	0.60	-0.7
298,112	-		GFF3476	0.60	-2.2
298,186	+		GFF3476	0.65	+0.4
298,186	+		GFF3476	0.65	+0.3
298,187	-		GFF3476	0.65	-1.0
298,307	-		GFF3476	0.72	+1.0
298,351	+		GFF3476	0.75	-1.7
298,549	+		GFF3476	0.88	-0.9
298,550	-		GFF3476	0.88	-0.4
298,550	-		GFF3476	0.88	+0.5
298,636	+				-0.7
298,636	+				-0.4
298,637	-				-0.0
298,637	-				+0.4
298,637	-				-0.3
298,744	+				+0.1
298,770	+				+0.4
298,770	+				+0.2
298,770	+				+0.4
298,771	-				+0.0
298,771	-				+0.2
298,773	+				-0.3
298,773	+				-0.5
298,773	+				+0.1
298,774	-				+0.2
298,774	-				-0.9
298,795	+				+1.5
298,819	+				-0.8
299,118	+		GFF3477	0.18	-0.9
299,118	+		GFF3477	0.18	+0.2
299,119	-		GFF3477	0.18	-0.1
299,119	-		GFF3477	0.18	-0.7
299,524	-		GFF3477	0.43	-0.5
299,529	+		GFF3477	0.44	-1.7
299,731	-		GFF3477	0.57	+1.4
299,731	-		GFF3477	0.57	+1.3
299,731	-		GFF3477	0.57	+0.4
299,781	+		GFF3477	0.60	-0.1
299,781	+		GFF3477	0.60	-0.0
299,782	-		GFF3477	0.60	-0.4
299,782	-		GFF3477	0.60	-0.4
299,782	-		GFF3477	0.60	-0.2
299,782	-		GFF3477	0.60	-1.0
300,060	+		GFF3477	0.78	+0.2
300,060	+		GFF3477	0.78	-1.3
300,060	+		GFF3477	0.78	+0.4
300,061	-		GFF3477	0.78	-2.1
300,061	-		GFF3477	0.78	-1.1
300,064	-		GFF3477	0.78	-0.8
300,321	+				-0.3
300,321	+				-0.9
300,321	+				+0.1
300,321	+				-0.8
300,322	-				-0.8
300,322	-				+0.1
300,322	-				+0.9
300,833	+		GFF3478	0.31	-0.5
300,833	+		GFF3478	0.31	-0.0
300,833	+		GFF3478	0.31	-1.3
300,833	+		GFF3478	0.31	-0.1
300,833	+		GFF3478	0.31	+0.2
300,834	-		GFF3478	0.32	-3.2
300,834	-		GFF3478	0.32	-0.3
300,842	+		GFF3478	0.32	-0.3
300,843	-		GFF3478	0.32	-0.5
300,863	+		GFF3478	0.34	+0.7
300,864	-		GFF3478	0.34	+1.3
300,864	-		GFF3478	0.34	-0.5
300,864	-		GFF3478	0.34	-0.6
301,115	+		GFF3478	0.52	-1.3
301,115	+		GFF3478	0.52	-0.3
301,115	+		GFF3478	0.52	+0.1
301,116	-		GFF3478	0.52	-0.1
301,116	-		GFF3478	0.52	+0.2
301,116	-		GFF3478	0.52	-0.1
301,163	+		GFF3478	0.56	-0.4
301,164	-		GFF3478	0.56	-0.8
301,164	-		GFF3478	0.56	+0.2
301,311	-		GFF3478	0.67	-0.2