Strain Fitness in Variovorax sp. SCN45 around GFF339

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF337 and GFF338 are separated by 12 nucleotidesGFF338 and GFF339 are separated by 23 nucleotidesGFF339 and GFF340 are separated by 0 nucleotides GFF337 - hypothetical protein, at 370,568 to 371,173 GFF337 GFF338 - Chloramphenicol acetyltransferase (EC 2.3.1.28), at 371,186 to 371,932 GFF338 GFF339 - Exodeoxyribonuclease I (EC 3.1.11.1), at 371,956 to 373,395 GFF339 GFF340 - Cardiolipin synthase, bacterial type ClsA, at 373,396 to 374,949 GFF340 Position (kb) 371 372 373 374Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 370.959 kb on + strand, within GFF337at 370.959 kb on + strand, within GFF337at 370.959 kb on + strand, within GFF337at 370.960 kb on - strand, within GFF337at 370.960 kb on - strand, within GFF337at 370.960 kb on - strand, within GFF337at 371.076 kb on + strand, within GFF337at 371.077 kb on - strand, within GFF337at 371.077 kb on - strand, within GFF337at 371.101 kb on - strand, within GFF337at 371.450 kb on + strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.451 kb on - strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.567 kb on + strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.568 kb on - strand, within GFF338at 371.717 kb on + strand, within GFF338at 371.727 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.772 kb on + strand, within GFF338at 371.773 kb on + strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.773 kb on - strand, within GFF338at 371.778 kb on + strand, within GFF338at 371.778 kb on + strand, within GFF338at 371.779 kb on - strand, within GFF338at 371.799 kb on + strand, within GFF338at 371.799 kb on + strand, within GFF338at 371.800 kb on - strand, within GFF338at 371.991 kb on - strandat 371.991 kb on - strandat 372.174 kb on - strand, within GFF339at 372.300 kb on - strand, within GFF339at 372.345 kb on - strand, within GFF339at 372.345 kb on - strand, within GFF339at 372.345 kb on - strand, within GFF339at 372.980 kb on + strand, within GFF339at 373.043 kb on + strand, within GFF339at 373.044 kb on - strand, within GFF339at 373.109 kb on + strand, within GFF339at 373.110 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.245 kb on - strand, within GFF339at 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.266 kb on - strandat 373.266 kb on - strandat 373.266 kb on - strandat 373.367 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.538 kb on + strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.539 kb on - strandat 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.658 kb on + strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.659 kb on - strand, within GFF340at 373.700 kb on + strand, within GFF340at 373.700 kb on + strand, within GFF340at 373.701 kb on - strand, within GFF340at 373.701 kb on - strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.823 kb on + strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 373.824 kb on - strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.009 kb on + strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.010 kb on - strand, within GFF340at 374.084 kb on + strand, within GFF340at 374.084 kb on + strand, within GFF340at 374.085 kb on - strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.186 kb on + strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.187 kb on - strand, within GFF340at 374.286 kb on + strand, within GFF340at 374.320 kb on + strand, within GFF340

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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370,959 + GFF337 0.65 +0.5
370,959 + GFF337 0.65 +1.3
370,959 + GFF337 0.65 -0.7
370,960 - GFF337 0.65 -0.4
370,960 - GFF337 0.65 +0.5
370,960 - GFF337 0.65 -0.2
371,076 + GFF337 0.84 -1.9
371,077 - GFF337 0.84 +0.1
371,077 - GFF337 0.84 +0.3
371,101 - GFF337 0.88 -0.8
371,450 + GFF338 0.35 -0.1
371,451 - GFF338 0.35 +0.1
371,451 - GFF338 0.35 +0.6
371,451 - GFF338 0.35 -0.0
371,451 - GFF338 0.35 +0.8
371,567 + GFF338 0.51 -0.4
371,567 + GFF338 0.51 -0.3
371,567 + GFF338 0.51 -0.4
371,567 + GFF338 0.51 -0.4
371,567 + GFF338 0.51 +0.3
371,567 + GFF338 0.51 -0.9
371,568 - GFF338 0.51 +1.9
371,568 - GFF338 0.51 +0.0
371,568 - GFF338 0.51 -0.9
371,568 - GFF338 0.51 -1.2
371,568 - GFF338 0.51 -0.2
371,568 - GFF338 0.51 -0.1
371,568 - GFF338 0.51 -0.6
371,717 + GFF338 0.71 -1.5
371,727 + GFF338 0.72 -0.5
371,772 + GFF338 0.78 -0.2
371,772 + GFF338 0.78 -0.3
371,772 + GFF338 0.78 -1.2
371,772 + GFF338 0.78 -0.0
371,772 + GFF338 0.78 -0.9
371,772 + GFF338 0.78 -1.0
371,772 + GFF338 0.78 -0.5
371,773 + GFF338 0.79 +1.3
371,773 - GFF338 0.79 -0.5
371,773 - GFF338 0.79 -1.4
371,773 - GFF338 0.79 +0.8
371,773 - GFF338 0.79 -0.6
371,773 - GFF338 0.79 -0.1
371,773 - GFF338 0.79 -0.1
371,773 - GFF338 0.79 -0.3
371,773 - GFF338 0.79 +0.4
371,773 - GFF338 0.79 -1.2
371,778 + GFF338 0.79 -1.5
371,778 + GFF338 0.79 +0.3
371,779 - GFF338 0.79 +1.3
371,799 + GFF338 0.82 +0.8
371,799 + GFF338 0.82 -0.1
371,800 - GFF338 0.82 -0.3
371,991 - -1.6
371,991 - -0.7
372,174 - GFF339 0.15 -2.0
372,300 - GFF339 0.24 -0.7
372,345 - GFF339 0.27 -2.4
372,345 - GFF339 0.27 -0.5
372,345 - GFF339 0.27 -1.3
372,980 + GFF339 0.71 -2.0
373,043 + GFF339 0.75 -1.5
373,044 - GFF339 0.76 -2.8
373,109 + GFF339 0.80 -1.5
373,110 - GFF339 0.80 +0.3
373,245 - GFF339 0.90 -2.8
373,245 - GFF339 0.90 -2.3
373,245 - GFF339 0.90 -1.4
373,265 + -1.9
373,265 + -0.3
373,265 + -1.5
373,266 - -0.3
373,266 - +0.3
373,266 - -2.6
373,367 + -1.5
373,538 + -0.0
373,538 + -1.0
373,538 + -0.0
373,538 + -3.4
373,538 + -1.3
373,538 + -0.1
373,538 + +0.1
373,539 - +0.8
373,539 - -0.4
373,539 - -0.3
373,539 - -0.2
373,539 - -0.2
373,539 - +0.9
373,539 - -0.7
373,539 - -2.2
373,658 + GFF340 0.17 +0.8
373,658 + GFF340 0.17 -0.1
373,658 + GFF340 0.17 +0.2
373,658 + GFF340 0.17 -0.3
373,659 - GFF340 0.17 -1.1
373,659 - GFF340 0.17 -0.1
373,659 - GFF340 0.17 -0.0
373,700 + GFF340 0.20 -0.5
373,700 + GFF340 0.20 -0.8
373,701 - GFF340 0.20 -0.8
373,701 - GFF340 0.20 +0.1
373,823 + GFF340 0.27 +0.6
373,823 + GFF340 0.27 +1.0
373,823 + GFF340 0.27 -1.7
373,823 + GFF340 0.27 +0.2
373,824 - GFF340 0.28 -1.6
373,824 - GFF340 0.28 +0.3
373,824 - GFF340 0.28 -1.0
373,824 - GFF340 0.28 -0.4
374,009 + GFF340 0.39 +0.7
374,009 + GFF340 0.39 -0.6
374,009 + GFF340 0.39 +0.4
374,009 + GFF340 0.39 -0.2
374,009 + GFF340 0.39 -0.2
374,010 - GFF340 0.40 -1.0
374,010 - GFF340 0.40 -0.7
374,010 - GFF340 0.40 -0.7
374,010 - GFF340 0.40 -0.7
374,084 + GFF340 0.44 +0.1
374,084 + GFF340 0.44 -0.4
374,085 - GFF340 0.44 -1.1
374,186 + GFF340 0.51 +0.8
374,186 + GFF340 0.51 +2.3
374,186 + GFF340 0.51 -0.1
374,186 + GFF340 0.51 +0.3
374,186 + GFF340 0.51 -0.5
374,186 + GFF340 0.51 +0.3
374,186 + GFF340 0.51 +0.1
374,186 + GFF340 0.51 +0.6
374,187 - GFF340 0.51 -0.1
374,187 - GFF340 0.51 -0.4
374,187 - GFF340 0.51 +0.6
374,286 + GFF340 0.57 +0.7
374,320 + GFF340 0.59 -1.0

Or see this region's nucleotide sequence