Strain Fitness in Variovorax sp. SCN45 around GFF3301

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3299 and GFF3300 are separated by 46 nucleotidesGFF3300 and GFF3301 overlap by 4 nucleotidesGFF3301 and GFF3302 are separated by 129 nucleotidesGFF3302 and GFF3303 overlap by 4 nucleotides GFF3299 - Pirin, at 123,322 to 124,218 GFF3299 GFF3300 - hypothetical protein, at 124,265 to 124,822 GFF3300 GFF3301 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 124,819 to 126,246 GFF3301 GFF3302 - no description, at 126,376 to 127,017 GFF3302 GFF3303 - Acetyltransferase, GNAT family, at 127,014 to 127,778 GFF3303 Position (kb) 124 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.968 kb on + strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 123.969 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.020 kb on - strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.061 kb on + strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.062 kb on - strand, within GFF3299at 124.236 kb on - strandat 124.305 kb on + strandat 124.306 kb on - strandat 124.306 kb on - strandat 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.386 kb on + strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.387 kb on - strand, within GFF3300at 124.512 kb on + strand, within GFF3300at 124.513 kb on - strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.629 kb on + strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 124.630 kb on - strand, within GFF3300at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.069 kb on + strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.070 kb on - strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.117 kb on + strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.118 kb on - strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.162 kb on + strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.163 kb on - strand, within GFF3301at 125.177 kb on + strand, within GFF3301at 125.178 kb on - strand, within GFF3301at 125.356 kb on - strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.423 kb on + strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.424 kb on - strand, within GFF3301at 125.498 kb on + strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.499 kb on - strand, within GFF3301at 125.621 kb on + strand, within GFF3301at 125.622 kb on - strand, within GFF3301at 125.622 kb on - strand, within GFF3301at 126.023 kb on + strand, within GFF3301at 126.207 kb on + strandat 126.207 kb on + strandat 126.207 kb on + strandat 126.286 kb on - strandat 126.355 kb on - strandat 126.406 kb on + strandat 126.407 kb on - strandat 126.407 kb on - strandat 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.670 kb on + strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.671 kb on - strand, within GFF3302at 126.729 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.880 kb on + strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 126.881 kb on - strand, within GFF3302at 127.015 kb on + strandat 127.016 kb on - strandat 127.037 kb on - strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.069 kb on + strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strandat 127.070 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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123,968 + GFF3299 0.72 -0.6
123,968 + GFF3299 0.72 -0.1
123,968 + GFF3299 0.72 -0.4
123,968 + GFF3299 0.72 -1.5
123,968 + GFF3299 0.72 -0.6
123,968 + GFF3299 0.72 -2.4
123,968 + GFF3299 0.72 +0.2
123,968 + GFF3299 0.72 -0.8
123,968 + GFF3299 0.72 +1.6
123,968 + GFF3299 0.72 -0.4
123,968 + GFF3299 0.72 -1.2
123,968 + GFF3299 0.72 -0.4
123,968 + GFF3299 0.72 -1.1
123,968 + GFF3299 0.72 -1.2
123,968 + GFF3299 0.72 -0.1
123,968 + GFF3299 0.72 -0.5
123,969 - GFF3299 0.72 -0.0
123,969 - GFF3299 0.72 -1.8
123,969 - GFF3299 0.72 -0.5
123,969 - GFF3299 0.72 -0.7
123,969 - GFF3299 0.72 +1.0
123,969 - GFF3299 0.72 -0.6
123,969 - GFF3299 0.72 +0.3
123,969 - GFF3299 0.72 -0.9
123,969 - GFF3299 0.72 -0.6
123,969 - GFF3299 0.72 -1.9
123,969 - GFF3299 0.72 +0.2
123,969 - GFF3299 0.72 -1.0
123,969 - GFF3299 0.72 -0.0
123,969 - GFF3299 0.72 -0.1
123,969 - GFF3299 0.72 -0.1
124,020 - GFF3299 0.78 -0.3
124,020 - GFF3299 0.78 -0.3
124,020 - GFF3299 0.78 -0.5
124,061 + GFF3299 0.82 -0.8
124,061 + GFF3299 0.82 +0.3
124,061 + GFF3299 0.82 +0.3
124,061 + GFF3299 0.82 -0.8
124,062 - GFF3299 0.82 +0.1
124,062 - GFF3299 0.82 -0.5
124,236 - -0.4
124,305 + -0.1
124,306 - -0.3
124,306 - -0.4
124,386 + GFF3300 0.22 +0.3
124,386 + GFF3300 0.22 -0.8
124,386 + GFF3300 0.22 -0.6
124,386 + GFF3300 0.22 -0.2
124,386 + GFF3300 0.22 +0.5
124,386 + GFF3300 0.22 +0.3
124,386 + GFF3300 0.22 +0.1
124,387 - GFF3300 0.22 +0.5
124,387 - GFF3300 0.22 +0.5
124,387 - GFF3300 0.22 -1.9
124,387 - GFF3300 0.22 +0.5
124,387 - GFF3300 0.22 -1.4
124,387 - GFF3300 0.22 -2.8
124,387 - GFF3300 0.22 +0.6
124,387 - GFF3300 0.22 -1.5
124,512 + GFF3300 0.44 -0.5
124,513 - GFF3300 0.44 -0.6
124,629 + GFF3300 0.65 -0.1
124,629 + GFF3300 0.65 +0.1
124,629 + GFF3300 0.65 -0.5
124,629 + GFF3300 0.65 -0.4
124,630 - GFF3300 0.65 -1.4
124,630 - GFF3300 0.65 -0.4
124,630 - GFF3300 0.65 -1.7
125,069 + GFF3301 0.18 +0.0
125,069 + GFF3301 0.18 +0.2
125,069 + GFF3301 0.18 -0.5
125,069 + GFF3301 0.18 -0.0
125,069 + GFF3301 0.18 -0.5
125,069 + GFF3301 0.18 +1.4
125,069 + GFF3301 0.18 -0.8
125,069 + GFF3301 0.18 +0.7
125,069 + GFF3301 0.18 -0.4
125,069 + GFF3301 0.18 +1.6
125,069 + GFF3301 0.18 -0.4
125,069 + GFF3301 0.18 -0.8
125,070 - GFF3301 0.18 +1.1
125,070 - GFF3301 0.18 -1.0
125,070 - GFF3301 0.18 +0.8
125,070 - GFF3301 0.18 +1.0
125,070 - GFF3301 0.18 -0.3
125,070 - GFF3301 0.18 -0.4
125,117 + GFF3301 0.21 +0.4
125,117 + GFF3301 0.21 -0.0
125,118 - GFF3301 0.21 +0.2
125,118 - GFF3301 0.21 +0.1
125,118 - GFF3301 0.21 +0.6
125,118 - GFF3301 0.21 -0.1
125,162 + GFF3301 0.24 -0.4
125,162 + GFF3301 0.24 +1.4
125,162 + GFF3301 0.24 +1.0
125,162 + GFF3301 0.24 -0.3
125,162 + GFF3301 0.24 -0.7
125,162 + GFF3301 0.24 +0.4
125,163 - GFF3301 0.24 -0.4
125,163 - GFF3301 0.24 +0.6
125,163 - GFF3301 0.24 -0.0
125,163 - GFF3301 0.24 -0.1
125,163 - GFF3301 0.24 +0.7
125,163 - GFF3301 0.24 -0.6
125,163 - GFF3301 0.24 -1.4
125,163 - GFF3301 0.24 +0.2
125,163 - GFF3301 0.24 +0.4
125,163 - GFF3301 0.24 +0.2
125,177 + GFF3301 0.25 -0.0
125,178 - GFF3301 0.25 -0.7
125,356 - GFF3301 0.38 -0.2
125,423 + GFF3301 0.42 -2.1
125,423 + GFF3301 0.42 -0.4
125,423 + GFF3301 0.42 +1.6
125,423 + GFF3301 0.42 -1.5
125,423 + GFF3301 0.42 -0.2
125,423 + GFF3301 0.42 -0.8
125,423 + GFF3301 0.42 -0.9
125,423 + GFF3301 0.42 +0.5
125,423 + GFF3301 0.42 +0.1
125,423 + GFF3301 0.42 +0.6
125,423 + GFF3301 0.42 +0.3
125,423 + GFF3301 0.42 +0.8
125,423 + GFF3301 0.42 -0.5
125,424 - GFF3301 0.42 -0.6
125,424 - GFF3301 0.42 -1.7
125,424 - GFF3301 0.42 -0.0
125,424 - GFF3301 0.42 -1.0
125,424 - GFF3301 0.42 -0.3
125,424 - GFF3301 0.42 +0.0
125,424 - GFF3301 0.42 +0.2
125,424 - GFF3301 0.42 -0.8
125,424 - GFF3301 0.42 +0.6
125,424 - GFF3301 0.42 -0.5
125,424 - GFF3301 0.42 -1.1
125,424 - GFF3301 0.42 -1.0
125,424 - GFF3301 0.42 -0.0
125,424 - GFF3301 0.42 +0.2
125,498 + GFF3301 0.48 -0.1
125,499 - GFF3301 0.48 +0.8
125,499 - GFF3301 0.48 +0.2
125,621 + GFF3301 0.56 -0.5
125,622 - GFF3301 0.56 +1.4
125,622 - GFF3301 0.56 +0.3
126,023 + GFF3301 0.84 -0.8
126,207 + +0.2
126,207 + -1.8
126,207 + -0.1
126,286 - +0.2
126,355 - +0.1
126,406 + +0.1
126,407 - -0.1
126,407 - -1.1
126,670 + GFF3302 0.46 +2.4
126,670 + GFF3302 0.46 -0.8
126,670 + GFF3302 0.46 +2.0
126,670 + GFF3302 0.46 -0.4
126,670 + GFF3302 0.46 +1.2
126,670 + GFF3302 0.46 -0.7
126,670 + GFF3302 0.46 +0.4
126,670 + GFF3302 0.46 -0.8
126,670 + GFF3302 0.46 -0.9
126,670 + GFF3302 0.46 -1.1
126,670 + GFF3302 0.46 -0.6
126,671 - GFF3302 0.46 -1.7
126,671 - GFF3302 0.46 -0.3
126,671 - GFF3302 0.46 +0.6
126,671 - GFF3302 0.46 +0.7
126,671 - GFF3302 0.46 -0.2
126,671 - GFF3302 0.46 -0.5
126,729 + GFF3302 0.55 -0.5
126,880 + GFF3302 0.79 +0.4
126,880 + GFF3302 0.79 -0.6
126,880 + GFF3302 0.79 +0.1
126,880 + GFF3302 0.79 -0.8
126,880 + GFF3302 0.79 +0.4
126,880 + GFF3302 0.79 -0.1
126,880 + GFF3302 0.79 -0.0
126,881 - GFF3302 0.79 -1.1
126,881 - GFF3302 0.79 -0.9
126,881 - GFF3302 0.79 -0.3
126,881 - GFF3302 0.79 -0.9
126,881 - GFF3302 0.79 +2.4
126,881 - GFF3302 0.79 -1.5
126,881 - GFF3302 0.79 +0.1
126,881 - GFF3302 0.79 -0.3
126,881 - GFF3302 0.79 -0.4
126,881 - GFF3302 0.79 -0.4
126,881 - GFF3302 0.79 -1.4
126,881 - GFF3302 0.79 -0.3
126,881 - GFF3302 0.79 -0.4
127,015 + -0.7
127,016 - -1.6
127,037 - -1.5
127,069 + -0.0
127,069 + -1.7
127,069 + -0.7
127,069 + +0.3
127,069 + +1.0
127,069 + +0.6
127,070 - +0.5
127,070 - -0.8
127,070 - -0.3
127,070 - -0.3
127,070 - -0.2
127,070 - +1.2

Or see this region's nucleotide sequence