Strain Fitness in Variovorax sp. SCN45 around GFF3226

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
47,024	+		GFF3225	0.62	+0.1
47,120	+		GFF3225	0.66	+1.3
47,120	+		GFF3225	0.66	+2.0
47,120	+		GFF3225	0.66	-0.4
47,134	+		GFF3225	0.67	+1.4
47,135	-		GFF3225	0.67	+0.6
47,135	-		GFF3225	0.67	+0.3
47,369	-		GFF3225	0.77	-0.4
47,635	+		GFF3225	0.89	+0.4
47,636	-		GFF3225	0.89	-0.9
47,636	-		GFF3225	0.89	-1.0
47,665	+				+0.4
47,710	+				-0.8
47,710	+				+0.4
47,710	+				+0.4
47,826	+				-0.4
47,826	+				-0.7
47,891	+				-2.2
47,892	-				-1.3
48,192	+		GFF3226	0.62	-0.7
48,192	+		GFF3226	0.62	-1.3
48,193	-		GFF3226	0.62	-0.4
48,381	+		GFF3227	0.11	+0.4
48,381	+		GFF3227	0.11	-0.3
48,387	+		GFF3227	0.12	+0.0
48,388	-		GFF3227	0.13	+1.0
49,154	+		GFF3228	0.45	-0.4
49,280	+		GFF3228	0.58	+0.3