Strain Fitness in Variovorax sp. SCN45 around GFF2794

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2793 and GFF2794 overlap by 4 nucleotidesGFF2794 and GFF2795 are separated by 27 nucleotidesGFF2795 and GFF2796 are separated by 122 nucleotides GFF2793 - Tricarboxylate transport protein TctC, at 224,081 to 225,073 GFF2793 GFF2794 - Molybdopterin synthase catalytic subunit MoaE (EC 2.8.1.12), at 225,070 to 225,546 GFF2794 GFF2795 - no description, at 225,574 to 225,687 GFF2795 GFF2796 - Dihydrodipicolinate synthase family protein PP2639, at 225,810 to 226,706 GFF2796 Position (kb) 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 224.389 kb on - strand, within GFF2793at 224.391 kb on - strand, within GFF2793at 224.522 kb on + strand, within GFF2793at 224.522 kb on + strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.523 kb on - strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.624 kb on + strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.625 kb on - strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.852 kb on + strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.853 kb on - strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.855 kb on + strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.856 kb on - strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.903 kb on + strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.904 kb on - strand, within GFF2793at 224.981 kb on + strandat 224.982 kb on - strandat 224.982 kb on - strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.020 kb on + strandat 225.021 kb on - strandat 225.021 kb on - strandat 225.021 kb on - strandat 225.071 kb on + strandat 225.071 kb on + strandat 225.071 kb on + strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.072 kb on - strandat 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.194 kb on + strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.195 kb on - strand, within GFF2794at 225.381 kb on - strand, within GFF2794at 225.381 kb on - strand, within GFF2794at 225.568 kb on + strandat 225.569 kb on - strandat 225.569 kb on - strandat 225.834 kb on - strandat 225.834 kb on - strandat 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.155 kb on + strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.156 kb on - strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.233 kb on + strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.234 kb on - strand, within GFF2796at 226.245 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.378 kb on + strand, within GFF2796at 226.379 kb on - strand, within GFF2796at 226.379 kb on - strand, within GFF2796

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
224,389 - GFF2793 0.31 +0.4
224,391 - GFF2793 0.31 -0.2
224,522 + GFF2793 0.44 +0.2
224,522 + GFF2793 0.44 +0.6
224,523 - GFF2793 0.45 -0.1
224,523 - GFF2793 0.45 -0.4
224,523 - GFF2793 0.45 +1.3
224,523 - GFF2793 0.45 +0.0
224,523 - GFF2793 0.45 -0.7
224,624 + GFF2793 0.55 -0.2
224,624 + GFF2793 0.55 +0.2
224,624 + GFF2793 0.55 -0.4
224,624 + GFF2793 0.55 -1.0
224,624 + GFF2793 0.55 +0.3
224,624 + GFF2793 0.55 +0.2
224,624 + GFF2793 0.55 -0.8
224,624 + GFF2793 0.55 +0.2
224,624 + GFF2793 0.55 +0.1
224,624 + GFF2793 0.55 -2.1
224,624 + GFF2793 0.55 +0.0
224,625 - GFF2793 0.55 +0.2
224,625 - GFF2793 0.55 -0.1
224,625 - GFF2793 0.55 +0.3
224,625 - GFF2793 0.55 -1.1
224,625 - GFF2793 0.55 +1.0
224,852 + GFF2793 0.78 -0.2
224,852 + GFF2793 0.78 +2.1
224,852 + GFF2793 0.78 +0.4
224,852 + GFF2793 0.78 -0.5
224,853 - GFF2793 0.78 -0.3
224,853 - GFF2793 0.78 +0.0
224,853 - GFF2793 0.78 -0.6
224,855 + GFF2793 0.78 -1.1
224,855 + GFF2793 0.78 +0.0
224,856 - GFF2793 0.78 +0.8
224,856 - GFF2793 0.78 +0.8
224,856 - GFF2793 0.78 -0.2
224,856 - GFF2793 0.78 +0.3
224,856 - GFF2793 0.78 -0.3
224,856 - GFF2793 0.78 +0.3
224,856 - GFF2793 0.78 -1.7
224,903 + GFF2793 0.83 +1.1
224,903 + GFF2793 0.83 -0.5
224,903 + GFF2793 0.83 -0.9
224,903 + GFF2793 0.83 +0.8
224,904 - GFF2793 0.83 -0.0
224,904 - GFF2793 0.83 -0.4
224,904 - GFF2793 0.83 +0.7
224,981 + +0.4
224,982 - -1.3
224,982 - +0.0
225,020 + +1.6
225,020 + +0.1
225,020 + -0.2
225,020 + +0.2
225,020 + +0.4
225,021 - +0.8
225,021 - -0.9
225,021 - +0.0
225,071 + +0.5
225,071 + +0.5
225,071 + -0.1
225,072 - -0.9
225,072 - +0.6
225,072 - +0.0
225,072 - -0.1
225,072 - -1.0
225,072 - -1.0
225,194 + GFF2794 0.26 -0.6
225,194 + GFF2794 0.26 -0.1
225,194 + GFF2794 0.26 -0.9
225,194 + GFF2794 0.26 -0.3
225,195 - GFF2794 0.26 -0.0
225,195 - GFF2794 0.26 -0.5
225,195 - GFF2794 0.26 +0.0
225,381 - GFF2794 0.65 -0.8
225,381 - GFF2794 0.65 -0.4
225,568 + +0.7
225,569 - +1.8
225,569 - +0.8
225,834 - -0.1
225,834 - -1.9
226,155 + GFF2796 0.38 +0.3
226,155 + GFF2796 0.38 -1.2
226,155 + GFF2796 0.38 +0.0
226,155 + GFF2796 0.38 -0.5
226,155 + GFF2796 0.38 +0.4
226,155 + GFF2796 0.38 -0.3
226,156 - GFF2796 0.39 -0.3
226,156 - GFF2796 0.39 -0.4
226,156 - GFF2796 0.39 -0.2
226,156 - GFF2796 0.39 -0.6
226,156 - GFF2796 0.39 +0.0
226,156 - GFF2796 0.39 +0.2
226,156 - GFF2796 0.39 +0.0
226,156 - GFF2796 0.39 -1.1
226,156 - GFF2796 0.39 -0.5
226,233 + GFF2796 0.47 -0.4
226,233 + GFF2796 0.47 -0.1
226,233 + GFF2796 0.47 -2.2
226,234 - GFF2796 0.47 -1.6
226,234 - GFF2796 0.47 -0.6
226,234 - GFF2796 0.47 -0.0
226,245 + GFF2796 0.48 -0.7
226,378 + GFF2796 0.63 -0.1
226,378 + GFF2796 0.63 +0.0
226,378 + GFF2796 0.63 -0.5
226,379 - GFF2796 0.63 -1.4
226,379 - GFF2796 0.63 +0.1

Or see this region's nucleotide sequence