Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2723 and GFF2724 are separated by 51 nucleotides GFF2724 and GFF2725 are separated by 13 nucleotides GFF2725 and GFF2726 are separated by 22 nucleotides
GFF2723 - Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit, at 155,723 to 156,556
GFF2723
GFF2724 - FIG01220323: hypothetical protein, at 156,608 to 157,678
GFF2724
GFF2725 - Isochorismatase (EC 3.3.2.1), at 157,692 to 158,228
GFF2725
GFF2726 - hypothetical protein, at 158,251 to 159,843
GFF2726
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 155.679 kb on + strand at 155.679 kb on + strand at 155.679 kb on + strand at 155.679 kb on + strand at 155.679 kb on + strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 155.680 kb on - strand at 156.180 kb on - strand, within GFF2723 at 156.180 kb on - strand, within GFF2723 at 156.180 kb on - strand, within GFF2723 at 156.180 kb on - strand, within GFF2723 at 156.321 kb on + strand, within GFF2723 at 156.321 kb on + strand, within GFF2723 at 156.321 kb on + strand, within GFF2723 at 156.322 kb on - strand, within GFF2723 at 156.322 kb on - strand, within GFF2723 at 156.322 kb on - strand, within GFF2723 at 156.322 kb on - strand, within GFF2723 at 156.322 kb on - strand, within GFF2723 at 156.485 kb on + strand at 156.485 kb on + strand at 156.485 kb on + strand at 156.485 kb on + strand at 156.485 kb on + strand at 156.486 kb on - strand at 156.486 kb on - strand at 156.486 kb on - strand at 156.486 kb on - strand at 156.686 kb on + strand at 156.686 kb on + strand at 156.686 kb on + strand at 156.686 kb on + strand at 156.687 kb on - strand at 156.687 kb on - strand at 156.687 kb on - strand at 156.687 kb on - strand at 156.713 kb on + strand at 156.713 kb on + strand at 156.714 kb on - strand at 156.714 kb on - strand at 156.770 kb on + strand, within GFF2724 at 156.770 kb on + strand, within GFF2724 at 156.771 kb on - strand, within GFF2724 at 156.771 kb on - strand, within GFF2724 at 156.771 kb on - strand, within GFF2724 at 156.806 kb on + strand, within GFF2724 at 156.807 kb on - strand, within GFF2724 at 156.821 kb on + strand, within GFF2724 at 156.821 kb on + strand, within GFF2724 at 156.822 kb on - strand, within GFF2724 at 156.822 kb on - strand, within GFF2724 at 156.839 kb on + strand, within GFF2724 at 156.840 kb on - strand, within GFF2724 at 156.899 kb on + strand, within GFF2724 at 156.900 kb on - strand, within GFF2724 at 156.926 kb on + strand, within GFF2724 at 156.926 kb on + strand, within GFF2724 at 156.926 kb on + strand, within GFF2724 at 156.926 kb on + strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.927 kb on - strand, within GFF2724 at 156.929 kb on - strand, within GFF2724 at 156.953 kb on + strand, within GFF2724 at 156.953 kb on + strand, within GFF2724 at 156.954 kb on - strand, within GFF2724 at 156.983 kb on + strand, within GFF2724 at 156.983 kb on + strand, within GFF2724 at 156.983 kb on + strand, within GFF2724 at 156.984 kb on - strand, within GFF2724 at 156.984 kb on - strand, within GFF2724 at 156.984 kb on - strand, within GFF2724 at 156.984 kb on - strand, within GFF2724 at 157.046 kb on + strand, within GFF2724 at 157.087 kb on - strand, within GFF2724 at 157.087 kb on - strand, within GFF2724 at 157.193 kb on + strand, within GFF2724 at 157.193 kb on + strand, within GFF2724 at 157.193 kb on + strand, within GFF2724 at 157.194 kb on - strand, within GFF2724 at 157.194 kb on - strand, within GFF2724 at 157.283 kb on + strand, within GFF2724 at 157.283 kb on + strand, within GFF2724 at 157.284 kb on - strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.358 kb on + strand, within GFF2724 at 157.359 kb on - strand, within GFF2724 at 157.361 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.508 kb on + strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.509 kb on - strand, within GFF2724 at 157.596 kb on - strand at 157.596 kb on - strand at 157.596 kb on - strand at 157.610 kb on + strand at 157.610 kb on + strand at 157.611 kb on - strand at 157.611 kb on - strand at 157.655 kb on - strand at 157.852 kb on + strand, within GFF2725 at 157.853 kb on - strand, within GFF2725 at 157.906 kb on + strand, within GFF2725 at 157.907 kb on - strand, within GFF2725 at 158.278 kb on + strand at 158.417 kb on + strand, within GFF2726 at 158.417 kb on + strand, within GFF2726 at 158.418 kb on - strand, within GFF2726 at 158.418 kb on - strand, within GFF2726 at 158.507 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.576 kb on + strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.577 kb on - strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.639 kb on + strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726 at 158.640 kb on - strand, within GFF2726
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 155,679 + -0.0 155,679 + -1.6 155,679 + -0.1 155,679 + -1.0 155,679 + -0.4 155,680 - +1.2 155,680 - +0.6 155,680 - -0.8 155,680 - -0.8 155,680 - -0.5 155,680 - -0.2 155,680 - -0.3 155,680 - -0.4 155,680 - -0.7 156,180 - GFF2723 0.55 -2.2 156,180 - GFF2723 0.55 -1.4 156,180 - GFF2723 0.55 +0.3 156,180 - GFF2723 0.55 -0.9 156,321 + GFF2723 0.72 -0.7 156,321 + GFF2723 0.72 -0.2 156,321 + GFF2723 0.72 +0.8 156,322 - GFF2723 0.72 +0.7 156,322 - GFF2723 0.72 -0.4 156,322 - GFF2723 0.72 +0.2 156,322 - GFF2723 0.72 -0.1 156,322 - GFF2723 0.72 -2.0 156,485 + +0.5 156,485 + +0.6 156,485 + +1.0 156,485 + +0.0 156,485 + -0.0 156,486 - -0.8 156,486 - -0.4 156,486 - -0.1 156,486 - +0.1 156,686 + -0.5 156,686 + -1.1 156,686 + -0.0 156,686 + +0.5 156,687 - -0.5 156,687 - +0.0 156,687 - -0.3 156,687 - -0.4 156,713 + +1.6 156,713 + -0.4 156,714 - +1.6 156,714 - -0.1 156,770 + GFF2724 0.15 -0.5 156,770 + GFF2724 0.15 -0.0 156,771 - GFF2724 0.15 -0.1 156,771 - GFF2724 0.15 +0.4 156,771 - GFF2724 0.15 -0.0 156,806 + GFF2724 0.18 -1.1 156,807 - GFF2724 0.19 -1.5 156,821 + GFF2724 0.20 -0.3 156,821 + GFF2724 0.20 +0.8 156,822 - GFF2724 0.20 -0.5 156,822 - GFF2724 0.20 +0.9 156,839 + GFF2724 0.22 +0.4 156,840 - GFF2724 0.22 -1.5 156,899 + GFF2724 0.27 -0.0 156,900 - GFF2724 0.27 +0.3 156,926 + GFF2724 0.30 -1.0 156,926 + GFF2724 0.30 -0.2 156,926 + GFF2724 0.30 -0.7 156,926 + GFF2724 0.30 -0.1 156,927 - GFF2724 0.30 +0.6 156,927 - GFF2724 0.30 -0.5 156,927 - GFF2724 0.30 +0.2 156,927 - GFF2724 0.30 +0.4 156,927 - GFF2724 0.30 -2.1 156,927 - GFF2724 0.30 -1.5 156,927 - GFF2724 0.30 -0.1 156,929 - GFF2724 0.30 -0.3 156,953 + GFF2724 0.32 -0.8 156,953 + GFF2724 0.32 -0.4 156,954 - GFF2724 0.32 -0.5 156,983 + GFF2724 0.35 -1.6 156,983 + GFF2724 0.35 +0.4 156,983 + GFF2724 0.35 +0.1 156,984 - GFF2724 0.35 -0.3 156,984 - GFF2724 0.35 -1.8 156,984 - GFF2724 0.35 -0.4 156,984 - GFF2724 0.35 -0.5 157,046 + GFF2724 0.41 -1.2 157,087 - GFF2724 0.45 -0.3 157,087 - GFF2724 0.45 -1.0 157,193 + GFF2724 0.55 +0.3 157,193 + GFF2724 0.55 -0.5 157,193 + GFF2724 0.55 -0.5 157,194 - GFF2724 0.55 -0.4 157,194 - GFF2724 0.55 +0.0 157,283 + GFF2724 0.63 -0.2 157,283 + GFF2724 0.63 +0.3 157,284 - GFF2724 0.63 -0.4 157,358 + GFF2724 0.70 -0.7 157,358 + GFF2724 0.70 +0.1 157,358 + GFF2724 0.70 +2.7 157,359 - GFF2724 0.70 -0.9 157,361 + GFF2724 0.70 -1.1 157,508 + GFF2724 0.84 -0.2 157,508 + GFF2724 0.84 -0.7 157,508 + GFF2724 0.84 -0.3 157,508 + GFF2724 0.84 -0.3 157,508 + GFF2724 0.84 -0.3 157,508 + GFF2724 0.84 -0.8 157,508 + GFF2724 0.84 +0.4 157,509 - GFF2724 0.84 -0.2 157,509 - GFF2724 0.84 -0.5 157,509 - GFF2724 0.84 -0.3 157,509 - GFF2724 0.84 +0.2 157,509 - GFF2724 0.84 +0.4 157,596 - +0.2 157,596 - -0.7 157,596 - +1.2 157,610 + +0.8 157,610 + -0.0 157,611 - -0.4 157,611 - -1.3 157,655 - -1.4 157,852 + GFF2725 0.30 +0.5 157,853 - GFF2725 0.30 -0.0 157,906 + GFF2725 0.40 -0.0 157,907 - GFF2725 0.40 +0.6 158,278 + -0.9 158,417 + GFF2726 0.10 +0.2 158,417 + GFF2726 0.10 -0.4 158,418 - GFF2726 0.10 -0.3 158,418 - GFF2726 0.10 -0.0 158,507 + GFF2726 0.16 -1.3 158,576 + GFF2726 0.20 -1.2 158,576 + GFF2726 0.20 -0.4 158,576 + GFF2726 0.20 -0.2 158,576 + GFF2726 0.20 -0.3 158,576 + GFF2726 0.20 -1.6 158,577 - GFF2726 0.20 +1.2 158,577 - GFF2726 0.20 +0.6 158,577 - GFF2726 0.20 -0.5 158,577 - GFF2726 0.20 -0.4 158,639 + GFF2726 0.24 -1.8 158,639 + GFF2726 0.24 -0.8 158,639 + GFF2726 0.24 -0.4 158,640 - GFF2726 0.24 -0.4 158,640 - GFF2726 0.24 +0.9 158,640 - GFF2726 0.24 +1.3 158,640 - GFF2726 0.24 -0.5 158,640 - GFF2726 0.24 +0.2 158,640 - GFF2726 0.24 +0.2 158,640 - GFF2726 0.24 -0.0 158,640 - GFF2726 0.24 -0.2 158,640 - GFF2726 0.24 -3.0 158,640 - GFF2726 0.24 -0.2
Or see this region's nucleotide sequence