Strain Fitness in Variovorax sp. SCN45 around GFF239

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
266,262	+		GFF237	0.65	+1.1
266,262	+		GFF237	0.65	+0.5
266,262	+		GFF237	0.65	-0.3
266,262	+		GFF237	0.65	-0.2
266,262	+		GFF237	0.65	+0.0
266,262	+		GFF237	0.65	-0.5
266,262	+		GFF237	0.65	+0.3
266,263	-		GFF237	0.65	+0.3
266,421	+		GFF237	0.78	-0.4
266,506	+		GFF237	0.85	-0.9
266,506	+		GFF237	0.85	-0.7
266,506	+		GFF237	0.85	-1.0
266,506	+		GFF237	0.85	+0.4
266,506	+		GFF237	0.85	+0.4
266,712	-				+3.6
266,716	+				+0.8
266,745	+				-0.0
266,745	+				-1.0
266,746	-				-0.7
266,813	-				-0.4
266,824	+				-0.1
266,824	+				-0.5
266,825	-				+3.6
266,843	+				-1.0
266,844	-				-0.5
266,844	-				-1.0
266,844	-				-0.3
266,844	-				-0.6
266,844	-				-0.2
267,275	+		GFF239	0.12	-2.0
267,617	+		GFF239	0.89	-1.3
267,618	-		GFF239	0.90	-1.7
267,618	-		GFF239	0.90	-1.7
267,618	-		GFF239	0.90	+0.7
267,618	-		GFF239	0.90	+1.0
267,641	+				-0.7
267,642	-				-0.7
267,742	+				-0.3
267,742	+				+0.1
267,742	+				+1.3
267,940	+		GFF240	0.19	-1.7
267,941	-		GFF240	0.19	-0.7
268,123	+		GFF240	0.31	-1.7
268,123	+		GFF240	0.31	-1.2
268,123	+		GFF240	0.31	-1.7
268,123	+		GFF240	0.31	+0.9
268,123	+		GFF240	0.31	-1.9
268,124	-		GFF240	0.31	-0.4
268,124	-		GFF240	0.31	-0.1
268,124	-		GFF240	0.31	-0.2
268,124	-		GFF240	0.31	-0.3
268,124	-		GFF240	0.31	-0.7
268,454	-		GFF240	0.53	+0.1