Strain Fitness in Variovorax sp. SCN45 around GFF2357

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2355 and GFF2356 are separated by 6 nucleotidesGFF2356 and GFF2357 overlap by 4 nucleotidesGFF2357 and GFF2358 are separated by 1 nucleotidesGFF2358 and GFF2359 are separated by 31 nucleotides GFF2355 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 406,416 to 407,462 GFF2355 GFF2356 - RNase adapter protein RapZ, at 407,469 to 408,347 GFF2356 GFF2357 - DNA repair protein RecN, at 408,344 to 410,026 GFF2357 GFF2358 - NAD kinase (EC 2.7.1.23), at 410,028 to 410,939 GFF2358 GFF2359 - Heat-inducible transcription repressor HrcA, at 410,971 to 411,978 GFF2359 Position (kb) 408 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 407.460 kb on + strandat 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.596 kb on + strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.597 kb on - strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.659 kb on + strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.660 kb on - strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.743 kb on + strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.744 kb on - strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.779 kb on + strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.780 kb on - strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.872 kb on + strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 407.873 kb on - strand, within GFF2356at 408.049 kb on + strand, within GFF2356at 408.049 kb on + strand, within GFF2356at 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.262 kb on + strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.263 kb on - strandat 408.265 kb on + strandat 408.266 kb on - strandat 408.266 kb on - strandat 408.809 kb on + strand, within GFF2357at 408.810 kb on - strand, within GFF2357at 408.810 kb on - strand, within GFF2357at 408.972 kb on + strand, within GFF2357at 408.972 kb on + strand, within GFF2357at 408.972 kb on + strand, within GFF2357at 408.972 kb on + strand, within GFF2357at 408.972 kb on + strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 408.973 kb on - strand, within GFF2357at 409.095 kb on + strand, within GFF2357at 409.095 kb on + strand, within GFF2357at 409.096 kb on - strand, within GFF2357at 409.584 kb on + strand, within GFF2357at 409.584 kb on + strand, within GFF2357at 410.939 kb on + strandat 410.939 kb on + strandat 410.939 kb on + strandat 410.939 kb on + strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.940 kb on - strandat 410.951 kb on + strandat 410.952 kb on - strandat 410.952 kb on - strandat 410.952 kb on - strandat 410.959 kb on + strandat 410.959 kb on + strandat 410.959 kb on + strandat 410.960 kb on - strandat 410.960 kb on - strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.019 kb on + strandat 411.020 kb on - strandat 411.020 kb on - strandat 411.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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407,460 + +0.1
407,596 + GFF2356 0.14 -1.1
407,596 + GFF2356 0.14 -0.5
407,596 + GFF2356 0.14 -1.6
407,596 + GFF2356 0.14 +0.7
407,596 + GFF2356 0.14 -1.6
407,596 + GFF2356 0.14 -1.9
407,597 - GFF2356 0.15 +1.4
407,597 - GFF2356 0.15 -1.0
407,597 - GFF2356 0.15 -1.2
407,597 - GFF2356 0.15 -0.5
407,597 - GFF2356 0.15 +0.6
407,659 + GFF2356 0.22 -0.5
407,659 + GFF2356 0.22 +0.6
407,659 + GFF2356 0.22 -0.9
407,659 + GFF2356 0.22 -0.5
407,659 + GFF2356 0.22 -0.7
407,659 + GFF2356 0.22 -0.8
407,660 - GFF2356 0.22 +0.3
407,660 - GFF2356 0.22 +1.4
407,660 - GFF2356 0.22 -0.2
407,660 - GFF2356 0.22 -0.7
407,660 - GFF2356 0.22 -0.7
407,660 - GFF2356 0.22 -1.3
407,743 + GFF2356 0.31 +0.2
407,743 + GFF2356 0.31 -0.4
407,743 + GFF2356 0.31 +2.8
407,743 + GFF2356 0.31 -1.1
407,743 + GFF2356 0.31 -1.7
407,743 + GFF2356 0.31 +0.2
407,743 + GFF2356 0.31 -0.9
407,744 - GFF2356 0.31 +0.8
407,744 - GFF2356 0.31 +0.5
407,744 - GFF2356 0.31 -0.1
407,779 + GFF2356 0.35 -0.9
407,779 + GFF2356 0.35 -0.2
407,779 + GFF2356 0.35 +0.4
407,780 - GFF2356 0.35 +1.8
407,780 - GFF2356 0.35 +0.2
407,780 - GFF2356 0.35 -0.9
407,780 - GFF2356 0.35 -0.2
407,780 - GFF2356 0.35 -0.0
407,872 + GFF2356 0.46 -1.0
407,872 + GFF2356 0.46 +0.2
407,872 + GFF2356 0.46 -0.5
407,872 + GFF2356 0.46 -1.1
407,873 - GFF2356 0.46 -0.5
407,873 - GFF2356 0.46 -1.0
407,873 - GFF2356 0.46 -0.8
407,873 - GFF2356 0.46 -1.3
407,873 - GFF2356 0.46 -1.0
407,873 - GFF2356 0.46 -2.4
407,873 - GFF2356 0.46 -1.8
407,873 - GFF2356 0.46 +0.5
407,873 - GFF2356 0.46 -1.5
407,873 - GFF2356 0.46 -1.9
407,873 - GFF2356 0.46 -0.8
407,873 - GFF2356 0.46 +0.2
408,049 + GFF2356 0.66 +0.6
408,049 + GFF2356 0.66 -2.3
408,262 + -1.4
408,262 + -1.4
408,262 + -0.9
408,262 + -0.8
408,262 + -0.8
408,263 - +1.4
408,263 - -0.2
408,263 - +0.5
408,263 - -0.8
408,263 - -0.7
408,263 - -0.8
408,265 + -2.1
408,266 - -1.7
408,266 - -3.2
408,809 + GFF2357 0.28 +0.1
408,810 - GFF2357 0.28 +0.9
408,810 - GFF2357 0.28 -1.8
408,972 + GFF2357 0.37 +0.5
408,972 + GFF2357 0.37 +3.1
408,972 + GFF2357 0.37 +1.0
408,972 + GFF2357 0.37 -0.5
408,972 + GFF2357 0.37 -0.2
408,973 - GFF2357 0.37 +0.4
408,973 - GFF2357 0.37 -1.2
408,973 - GFF2357 0.37 +0.3
408,973 - GFF2357 0.37 -1.2
408,973 - GFF2357 0.37 -0.1
408,973 - GFF2357 0.37 +0.3
409,095 + GFF2357 0.45 -0.5
409,095 + GFF2357 0.45 +0.2
409,096 - GFF2357 0.45 -0.3
409,584 + GFF2357 0.74 -0.6
409,584 + GFF2357 0.74 -0.3
410,939 + -0.4
410,939 + -0.6
410,939 + +0.8
410,939 + -0.5
410,940 - -0.8
410,940 - +0.6
410,940 - +0.2
410,940 - -0.1
410,940 - +0.6
410,940 - -1.7
410,940 - +1.4
410,940 - +0.5
410,951 + -0.3
410,952 - -0.0
410,952 - +0.1
410,952 - -0.5
410,959 + +0.8
410,959 + -0.3
410,959 + -0.2
410,960 - -0.8
410,960 - -0.1
411,019 + -0.5
411,019 + +0.4
411,019 + +1.0
411,019 + -0.1
411,020 - -0.4
411,020 - -0.2
411,020 - +0.8

Or see this region's nucleotide sequence