Strain Fitness in Variovorax sp. SCN45 around GFF2141

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2140 and GFF2141 are separated by 208 nucleotidesGFF2141 and GFF2142 are separated by 172 nucleotidesGFF2142 and GFF2143 are separated by 21 nucleotides GFF2140 - Ribose ABC transporter, substrate-binding protein RbsB (TC 3.A.1.2.1), at 189,387 to 190,340 GFF2140 GFF2141 - GTP-binding and nucleic acid-binding protein YchF, at 190,549 to 191,640 GFF2141 GFF2142 - Glutathione S-transferase (EC 2.5.1.18), at 191,813 to 192,487 GFF2142 GFF2143 - probable membrane protein YPO3302, at 192,509 to 192,973 GFF2143 Position (kb) 190 191 192Strain fitness (log2 ratio) -2 -1 0 1 2 3at 189.580 kb on + strand, within GFF2140at 189.713 kb on + strand, within GFF2140at 189.713 kb on + strand, within GFF2140at 189.714 kb on - strand, within GFF2140at 189.791 kb on - strand, within GFF2140at 190.153 kb on + strand, within GFF2140at 190.153 kb on + strand, within GFF2140at 190.153 kb on + strand, within GFF2140at 190.154 kb on - strand, within GFF2140at 190.154 kb on - strand, within GFF2140at 190.322 kb on + strandat 190.402 kb on + strandat 190.403 kb on - strandat 190.405 kb on + strandat 190.406 kb on - strandat 190.447 kb on + strandat 190.448 kb on - strandat 190.590 kb on + strandat 190.591 kb on - strandat 190.591 kb on - strandat 190.604 kb on + strandat 191.200 kb on + strand, within GFF2141at 191.200 kb on + strand, within GFF2141at 191.221 kb on + strand, within GFF2141at 191.221 kb on + strand, within GFF2141at 191.221 kb on + strand, within GFF2141at 191.392 kb on + strand, within GFF2141at 191.392 kb on + strand, within GFF2141at 191.392 kb on + strand, within GFF2141at 191.392 kb on + strand, within GFF2141at 191.392 kb on + strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.393 kb on - strand, within GFF2141at 191.494 kb on + strand, within GFF2141at 191.494 kb on + strand, within GFF2141at 191.494 kb on + strand, within GFF2141at 191.494 kb on + strand, within GFF2141at 191.494 kb on + strand, within GFF2141at 191.495 kb on - strand, within GFF2141at 191.495 kb on - strand, within GFF2141at 191.495 kb on - strand, within GFF2141at 191.495 kb on - strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.527 kb on + strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.528 kb on - strand, within GFF2141at 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.593 kb on + strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.594 kb on - strandat 191.638 kb on + strandat 191.638 kb on + strandat 191.638 kb on + strandat 191.638 kb on + strandat 191.638 kb on + strandat 191.639 kb on - strandat 191.639 kb on - strandat 191.641 kb on + strandat 191.641 kb on + strandat 191.775 kb on + strandat 191.775 kb on + strandat 191.776 kb on - strandat 192.410 kb on + strand, within GFF2142at 192.411 kb on - strand, within GFF2142at 192.440 kb on + strandat 192.441 kb on - strandat 192.441 kb on - strandat 192.441 kb on - strandat 192.441 kb on - strandat 192.546 kb on + strandat 192.546 kb on + strandat 192.547 kb on - strandat 192.573 kb on + strand, within GFF2143at 192.573 kb on + strand, within GFF2143at 192.573 kb on + strand, within GFF2143at 192.573 kb on + strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143at 192.574 kb on - strand, within GFF2143

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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189,580 + GFF2140 0.20 +0.3
189,713 + GFF2140 0.34 -0.3
189,713 + GFF2140 0.34 +0.8
189,714 - GFF2140 0.34 -0.5
189,791 - GFF2140 0.42 +0.7
190,153 + GFF2140 0.80 -1.1
190,153 + GFF2140 0.80 -0.3
190,153 + GFF2140 0.80 -0.6
190,154 - GFF2140 0.80 -0.6
190,154 - GFF2140 0.80 -1.5
190,322 + +0.3
190,402 + -0.6
190,403 - -0.4
190,405 + +0.8
190,406 - -0.2
190,447 + -0.8
190,448 - -0.4
190,590 + -0.1
190,591 - -0.4
190,591 - -0.3
190,604 + -0.9
191,200 + GFF2141 0.60 -0.4
191,200 + GFF2141 0.60 -1.4
191,221 + GFF2141 0.62 -0.6
191,221 + GFF2141 0.62 +0.7
191,221 + GFF2141 0.62 -1.0
191,392 + GFF2141 0.77 -0.2
191,392 + GFF2141 0.77 +0.8
191,392 + GFF2141 0.77 +0.3
191,392 + GFF2141 0.77 +0.8
191,392 + GFF2141 0.77 -0.7
191,393 - GFF2141 0.77 +0.8
191,393 - GFF2141 0.77 +1.4
191,393 - GFF2141 0.77 -1.0
191,393 - GFF2141 0.77 +0.1
191,393 - GFF2141 0.77 -0.8
191,393 - GFF2141 0.77 +0.7
191,393 - GFF2141 0.77 -2.1
191,393 - GFF2141 0.77 -0.9
191,393 - GFF2141 0.77 -1.4
191,494 + GFF2141 0.87 +0.7
191,494 + GFF2141 0.87 +0.4
191,494 + GFF2141 0.87 -0.3
191,494 + GFF2141 0.87 -0.6
191,494 + GFF2141 0.87 -0.3
191,495 - GFF2141 0.87 -0.9
191,495 - GFF2141 0.87 -0.0
191,495 - GFF2141 0.87 +0.2
191,495 - GFF2141 0.87 -0.0
191,527 + GFF2141 0.90 -1.6
191,527 + GFF2141 0.90 -0.6
191,527 + GFF2141 0.90 -0.4
191,527 + GFF2141 0.90 +0.1
191,527 + GFF2141 0.90 -0.2
191,527 + GFF2141 0.90 +0.8
191,527 + GFF2141 0.90 -0.5
191,527 + GFF2141 0.90 -0.2
191,527 + GFF2141 0.90 -0.4
191,528 - GFF2141 0.90 +0.8
191,528 - GFF2141 0.90 +0.4
191,528 - GFF2141 0.90 +0.7
191,528 - GFF2141 0.90 -1.2
191,528 - GFF2141 0.90 -0.2
191,528 - GFF2141 0.90 -0.8
191,528 - GFF2141 0.90 -0.2
191,528 - GFF2141 0.90 -0.3
191,593 + +0.2
191,593 + +3.4
191,593 + -0.2
191,593 + +0.2
191,593 + -0.6
191,593 + +0.5
191,593 + +1.0
191,593 + -2.0
191,593 + -0.5
191,594 - -1.2
191,594 - +0.8
191,594 - -0.3
191,594 - -0.7
191,594 - -0.5
191,594 - -1.1
191,594 - -0.3
191,594 - -2.7
191,638 + -0.1
191,638 + -0.6
191,638 + -0.4
191,638 + -0.5
191,638 + -0.6
191,639 - -0.8
191,639 - +0.3
191,641 + +0.5
191,641 + -1.1
191,775 + -1.5
191,775 + -0.9
191,776 - +0.2
192,410 + GFF2142 0.88 -0.2
192,411 - GFF2142 0.89 +1.2
192,440 + -0.1
192,441 - -0.7
192,441 - +0.2
192,441 - -0.6
192,441 - -1.2
192,546 + -0.2
192,546 + -0.1
192,547 - -0.7
192,573 + GFF2143 0.14 +1.6
192,573 + GFF2143 0.14 -0.8
192,573 + GFF2143 0.14 -0.7
192,573 + GFF2143 0.14 +0.8
192,574 - GFF2143 0.14 +0.6
192,574 - GFF2143 0.14 -0.1
192,574 - GFF2143 0.14 +1.5
192,574 - GFF2143 0.14 -0.4
192,574 - GFF2143 0.14 -2.1
192,574 - GFF2143 0.14 -0.5
192,574 - GFF2143 0.14 -1.0
192,574 - GFF2143 0.14 -1.2
192,574 - GFF2143 0.14 +0.0

Or see this region's nucleotide sequence