Strain Fitness in Variovorax sp. SCN45 around GFF201

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF200 and GFF201 are separated by 23 nucleotidesGFF201 and GFF202 are separated by 126 nucleotides GFF200 - Ortho-halobenzoate 1,2-dioxygenase alpha-ISP protein OhbB, at 227,471 to 228,727 GFF200 GFF201 - Probable ferredoxin oxidoreductase oxidoreductase protein (EC 1.-.-.- ), at 228,751 to 229,740 GFF201 GFF202 - Transcriptional regulator, LysR family, at 229,867 to 230,781 GFF202 Position (kb) 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2at 228.133 kb on - strand, within GFF200at 228.178 kb on - strand, within GFF200at 228.387 kb on + strand, within GFF200at 228.387 kb on + strand, within GFF200at 228.388 kb on - strand, within GFF200at 228.388 kb on - strand, within GFF200at 228.388 kb on - strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.588 kb on + strand, within GFF200at 228.589 kb on - strand, within GFF200at 228.589 kb on - strand, within GFF200at 228.589 kb on - strand, within GFF200at 228.606 kb on + strandat 228.607 kb on - strandat 228.651 kb on + strandat 228.652 kb on - strandat 228.746 kb on + strandat 228.746 kb on + strandat 228.746 kb on + strandat 228.767 kb on + strandat 228.767 kb on + strandat 228.861 kb on - strand, within GFF201at 228.861 kb on - strand, within GFF201at 229.020 kb on - strand, within GFF201at 229.021 kb on + strand, within GFF201at 229.021 kb on + strand, within GFF201at 229.022 kb on - strand, within GFF201at 229.022 kb on - strand, within GFF201at 229.169 kb on + strand, within GFF201at 229.170 kb on - strand, within GFF201at 229.170 kb on - strand, within GFF201at 229.230 kb on + strand, within GFF201at 229.350 kb on - strand, within GFF201at 229.350 kb on - strand, within GFF201at 229.535 kb on + strand, within GFF201at 229.535 kb on + strand, within GFF201at 229.536 kb on - strand, within GFF201at 229.643 kb on + strandat 229.644 kb on - strandat 229.644 kb on - strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 230.090 kb on - strand, within GFF202at 230.090 kb on - strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.195 kb on - strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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228,133 - GFF200 0.53 -0.6
228,178 - GFF200 0.56 +2.5
228,387 + GFF200 0.73 +0.8
228,387 + GFF200 0.73 +0.1
228,388 - GFF200 0.73 +0.3
228,388 - GFF200 0.73 +1.3
228,388 - GFF200 0.73 -0.2
228,588 + GFF200 0.89 -0.5
228,588 + GFF200 0.89 +0.6
228,588 + GFF200 0.89 +0.2
228,588 + GFF200 0.89 -1.0
228,588 + GFF200 0.89 -1.4
228,588 + GFF200 0.89 -0.2
228,588 + GFF200 0.89 +0.5
228,588 + GFF200 0.89 -0.2
228,588 + GFF200 0.89 -0.6
228,589 - GFF200 0.89 +0.6
228,589 - GFF200 0.89 -0.2
228,589 - GFF200 0.89 +0.2
228,606 + -0.6
228,607 - -0.4
228,651 + +0.0
228,652 - -0.9
228,746 + -0.0
228,746 + +0.5
228,746 + -0.0
228,767 + -0.3
228,767 + -0.0
228,861 - GFF201 0.11 -0.4
228,861 - GFF201 0.11 +0.7
229,020 - GFF201 0.27 -1.8
229,021 + GFF201 0.27 -0.5
229,021 + GFF201 0.27 -0.3
229,022 - GFF201 0.27 -0.2
229,022 - GFF201 0.27 -0.8
229,169 + GFF201 0.42 -0.1
229,170 - GFF201 0.42 -0.7
229,170 - GFF201 0.42 -2.3
229,230 + GFF201 0.48 -0.6
229,350 - GFF201 0.61 +0.2
229,350 - GFF201 0.61 -0.2
229,535 + GFF201 0.79 -0.4
229,535 + GFF201 0.79 +0.2
229,536 - GFF201 0.79 -0.4
229,643 + -0.1
229,644 - +0.6
229,644 - +1.0
229,726 + -0.5
229,726 + -1.3
229,726 + -0.4
229,726 + -0.6
229,726 + -0.2
229,726 + -1.6
229,726 + -1.5
229,726 + -0.6
229,726 + -0.6
229,726 + -0.3
229,726 + +0.9
229,726 + -1.6
229,726 + -0.6
229,726 + +0.7
229,726 + +0.3
229,726 + -0.0
229,727 - -0.6
229,727 - -0.6
229,727 - -0.3
229,727 - +0.2
229,727 - -0.6
229,727 - +0.7
229,727 - -0.3
229,727 - +1.6
229,727 - -0.0
229,727 - +1.1
229,727 - -1.3
229,727 - -0.2
229,727 - -0.6
229,727 - +0.7
229,727 - -0.7
229,727 - +0.1
229,727 - -1.4
229,727 - -0.2
229,727 - -0.2
229,727 - +0.9
229,727 - -2.6
229,727 - -0.7
229,727 - -0.3
230,090 - GFF202 0.24 -0.4
230,090 - GFF202 0.24 +0.1
230,194 + GFF202 0.36 +0.5
230,194 + GFF202 0.36 +0.1
230,195 - GFF202 0.36 +0.6
230,380 + GFF202 0.56 -0.7
230,380 + GFF202 0.56 -1.1
230,380 + GFF202 0.56 +0.2
230,380 + GFF202 0.56 +0.3
230,380 + GFF202 0.56 +0.6
230,380 + GFF202 0.56 -0.4
230,380 + GFF202 0.56 -0.3
230,380 + GFF202 0.56 +0.2
230,381 - GFF202 0.56 +0.1
230,381 - GFF202 0.56 -0.6
230,381 - GFF202 0.56 -0.0
230,381 - GFF202 0.56 -0.8
230,381 - GFF202 0.56 +0.4
230,381 - GFF202 0.56 -0.2
230,381 - GFF202 0.56 -0.4

Or see this region's nucleotide sequence