Experiment: Galactan from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21250 and ABI39_RS21255 overlap by 4 nucleotides ABI39_RS21255 and ABI39_RS21260 are separated by 58 nucleotides ABI39_RS21260 and ABI39_RS21265 are separated by 4 nucleotides
ABI39_RS21250: ABI39_RS21250 - hypothetical protein, at 5,233,428 to 5,234,357
_RS21250
ABI39_RS21255: ABI39_RS21255 - ABC transporter ATP-binding protein, at 5,234,354 to 5,235,031
_RS21255
ABI39_RS21260: ABI39_RS21260 - carboxypeptidase-like regulatory domain-containing protein, at 5,235,090 to 5,237,750
_RS21260
ABI39_RS21265: ABI39_RS21265 - GLPGLI family protein, at 5,237,755 to 5,238,621
_RS21265
Position (kb) 5235
5236
5237
5238 Strain fitness (log2 ratio) -1
0
1
2
3 at 5234.102 kb on + strand, within ABI39_RS21250 at 5234.152 kb on - strand, within ABI39_RS21250 at 5234.169 kb on + strand, within ABI39_RS21250 at 5234.237 kb on - strand, within ABI39_RS21250 at 5234.378 kb on - strand at 5234.440 kb on - strand, within ABI39_RS21255 at 5234.481 kb on + strand, within ABI39_RS21255 at 5234.504 kb on + strand, within ABI39_RS21255 at 5234.510 kb on + strand, within ABI39_RS21255 at 5234.576 kb on + strand, within ABI39_RS21255 at 5234.615 kb on - strand, within ABI39_RS21255 at 5234.766 kb on + strand, within ABI39_RS21255 at 5234.812 kb on + strand, within ABI39_RS21255 at 5234.866 kb on - strand, within ABI39_RS21255 at 5234.909 kb on - strand, within ABI39_RS21255 at 5234.985 kb on + strand at 5234.985 kb on + strand at 5234.988 kb on + strand at 5235.069 kb on + strand at 5235.116 kb on + strand at 5235.177 kb on - strand at 5235.209 kb on + strand at 5235.595 kb on + strand, within ABI39_RS21260 at 5235.595 kb on + strand, within ABI39_RS21260 at 5235.628 kb on + strand, within ABI39_RS21260 at 5235.629 kb on - strand, within ABI39_RS21260 at 5235.689 kb on + strand, within ABI39_RS21260 at 5235.786 kb on - strand, within ABI39_RS21260 at 5235.787 kb on + strand, within ABI39_RS21260 at 5236.070 kb on - strand, within ABI39_RS21260 at 5236.093 kb on + strand, within ABI39_RS21260 at 5236.097 kb on + strand, within ABI39_RS21260 at 5236.098 kb on - strand, within ABI39_RS21260 at 5236.142 kb on + strand, within ABI39_RS21260 at 5236.199 kb on - strand, within ABI39_RS21260 at 5236.226 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.451 kb on - strand, within ABI39_RS21260 at 5236.609 kb on - strand, within ABI39_RS21260 at 5236.671 kb on - strand, within ABI39_RS21260 at 5236.684 kb on + strand, within ABI39_RS21260 at 5236.685 kb on - strand, within ABI39_RS21260 at 5236.732 kb on + strand, within ABI39_RS21260 at 5236.898 kb on + strand, within ABI39_RS21260 at 5236.949 kb on + strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.967 kb on - strand, within ABI39_RS21260 at 5236.967 kb on - strand, within ABI39_RS21260 at 5237.249 kb on - strand, within ABI39_RS21260 at 5237.275 kb on + strand, within ABI39_RS21260 at 5237.334 kb on + strand, within ABI39_RS21260 at 5237.384 kb on + strand, within ABI39_RS21260 at 5237.478 kb on - strand, within ABI39_RS21260 at 5237.482 kb on - strand, within ABI39_RS21260 at 5237.513 kb on - strand at 5237.586 kb on - strand at 5237.601 kb on - strand at 5238.282 kb on + strand, within ABI39_RS21265 at 5238.283 kb on - strand, within ABI39_RS21265 at 5238.343 kb on - strand, within ABI39_RS21265 at 5238.382 kb on - strand, within ABI39_RS21265 at 5238.459 kb on + strand, within ABI39_RS21265
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato (C) remove 5,234,102 + ABI39_RS21250 0.72 -1.3 5,234,152 - ABI39_RS21250 0.78 +0.4 5,234,169 + ABI39_RS21250 0.80 +0.3 5,234,237 - ABI39_RS21250 0.87 -0.8 5,234,378 - -0.2 5,234,440 - ABI39_RS21255 0.13 +1.5 5,234,481 + ABI39_RS21255 0.19 -0.4 5,234,504 + ABI39_RS21255 0.22 +0.3 5,234,510 + ABI39_RS21255 0.23 -0.5 5,234,576 + ABI39_RS21255 0.33 -0.0 5,234,615 - ABI39_RS21255 0.38 -0.3 5,234,766 + ABI39_RS21255 0.61 -0.6 5,234,812 + ABI39_RS21255 0.68 +3.0 5,234,866 - ABI39_RS21255 0.76 -0.0 5,234,909 - ABI39_RS21255 0.82 -0.4 5,234,985 + -0.7 5,234,985 + +2.3 5,234,988 + +1.2 5,235,069 + -1.1 5,235,116 + +0.1 5,235,177 - +2.3 5,235,209 + -1.6 5,235,595 + ABI39_RS21260 0.19 -0.7 5,235,595 + ABI39_RS21260 0.19 +0.5 5,235,628 + ABI39_RS21260 0.20 +0.6 5,235,629 - ABI39_RS21260 0.20 +0.9 5,235,689 + ABI39_RS21260 0.23 +2.1 5,235,786 - ABI39_RS21260 0.26 -0.3 5,235,787 + ABI39_RS21260 0.26 -0.6 5,236,070 - ABI39_RS21260 0.37 +0.5 5,236,093 + ABI39_RS21260 0.38 -0.1 5,236,097 + ABI39_RS21260 0.38 +0.5 5,236,098 - ABI39_RS21260 0.38 -0.9 5,236,142 + ABI39_RS21260 0.40 -0.9 5,236,199 - ABI39_RS21260 0.42 -0.1 5,236,226 - ABI39_RS21260 0.43 -0.4 5,236,247 - ABI39_RS21260 0.43 -0.5 5,236,247 - ABI39_RS21260 0.43 +0.2 5,236,247 - ABI39_RS21260 0.43 -0.6 5,236,451 - ABI39_RS21260 0.51 -0.8 5,236,609 - ABI39_RS21260 0.57 +1.5 5,236,671 - ABI39_RS21260 0.59 +1.0 5,236,684 + ABI39_RS21260 0.60 -0.7 5,236,685 - ABI39_RS21260 0.60 -0.1 5,236,732 + ABI39_RS21260 0.62 +0.2 5,236,898 + ABI39_RS21260 0.68 +0.4 5,236,949 + ABI39_RS21260 0.70 -0.5 5,236,961 - ABI39_RS21260 0.70 -0.8 5,236,961 - ABI39_RS21260 0.70 +0.4 5,236,961 - ABI39_RS21260 0.70 +3.2 5,236,967 - ABI39_RS21260 0.71 +0.5 5,236,967 - ABI39_RS21260 0.71 -1.4 5,237,249 - ABI39_RS21260 0.81 -1.0 5,237,275 + ABI39_RS21260 0.82 +1.8 5,237,334 + ABI39_RS21260 0.84 +0.0 5,237,384 + ABI39_RS21260 0.86 +1.4 5,237,478 - ABI39_RS21260 0.90 +2.4 5,237,482 - ABI39_RS21260 0.90 +0.1 5,237,513 - +0.7 5,237,586 - -0.5 5,237,601 - +0.8 5,238,282 + ABI39_RS21265 0.61 +2.2 5,238,283 - ABI39_RS21265 0.61 +1.5 5,238,343 - ABI39_RS21265 0.68 +0.6 5,238,382 - ABI39_RS21265 0.72 -0.5 5,238,459 + ABI39_RS21265 0.81 +0.3
Or see this region's nucleotide sequence