Experiment: Galactan from Potato (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS01365 and ABI39_RS01370 are separated by 26 nucleotides ABI39_RS01370 and ABI39_RS01375 are separated by 6 nucleotides
ABI39_RS01365: ABI39_RS01365 - TolC family protein, at 419,755 to 421,218
_RS01365
ABI39_RS01370: ABI39_RS01370 - efflux RND transporter periplasmic adaptor subunit, at 421,245 to 422,231
_RS01370
ABI39_RS01375: ABI39_RS01375 - ABC transporter permease, at 422,238 to 423,413
_RS01375
Position (kb) 421
422
423 Strain fitness (log2 ratio) -2
-1
0
1
2 at 420.432 kb on - strand, within ABI39_RS01365 at 420.432 kb on - strand, within ABI39_RS01365 at 420.543 kb on - strand, within ABI39_RS01365 at 420.547 kb on - strand, within ABI39_RS01365 at 420.566 kb on + strand, within ABI39_RS01365 at 420.645 kb on - strand, within ABI39_RS01365 at 420.656 kb on + strand, within ABI39_RS01365 at 420.701 kb on + strand, within ABI39_RS01365 at 420.889 kb on + strand, within ABI39_RS01365 at 421.060 kb on + strand, within ABI39_RS01365 at 421.152 kb on - strand at 421.212 kb on + strand at 421.287 kb on - strand at 421.287 kb on - strand at 421.871 kb on - strand, within ABI39_RS01370 at 421.949 kb on + strand, within ABI39_RS01370 at 422.081 kb on + strand, within ABI39_RS01370 at 422.082 kb on - strand, within ABI39_RS01370 at 422.085 kb on + strand, within ABI39_RS01370 at 422.086 kb on - strand, within ABI39_RS01370 at 422.087 kb on + strand, within ABI39_RS01370 at 422.087 kb on + strand, within ABI39_RS01370 at 422.107 kb on - strand, within ABI39_RS01370 at 422.313 kb on + strand at 422.364 kb on - strand, within ABI39_RS01375 at 422.548 kb on - strand, within ABI39_RS01375 at 422.553 kb on - strand, within ABI39_RS01375 at 422.619 kb on + strand, within ABI39_RS01375 at 422.650 kb on - strand, within ABI39_RS01375 at 422.708 kb on - strand, within ABI39_RS01375 at 422.723 kb on + strand, within ABI39_RS01375 at 422.835 kb on - strand, within ABI39_RS01375 at 423.050 kb on - strand, within ABI39_RS01375 at 423.076 kb on + strand, within ABI39_RS01375 at 423.080 kb on - strand, within ABI39_RS01375 at 423.207 kb on - strand, within ABI39_RS01375
Per-strain Table
Position Strand Gene LocusTag Fraction Galactan from Potato (C) remove 420,432 - ABI39_RS01365 0.46 +0.5 420,432 - ABI39_RS01365 0.46 -0.3 420,543 - ABI39_RS01365 0.54 +1.2 420,547 - ABI39_RS01365 0.54 -1.9 420,566 + ABI39_RS01365 0.55 +0.2 420,645 - ABI39_RS01365 0.61 +1.3 420,656 + ABI39_RS01365 0.62 +2.5 420,701 + ABI39_RS01365 0.65 +1.3 420,889 + ABI39_RS01365 0.77 -0.3 421,060 + ABI39_RS01365 0.89 +1.2 421,152 - -0.4 421,212 + +0.1 421,287 - -1.6 421,287 - -2.0 421,871 - ABI39_RS01370 0.63 +0.3 421,949 + ABI39_RS01370 0.71 -0.7 422,081 + ABI39_RS01370 0.85 -0.0 422,082 - ABI39_RS01370 0.85 +0.2 422,085 + ABI39_RS01370 0.85 +1.7 422,086 - ABI39_RS01370 0.85 +0.3 422,087 + ABI39_RS01370 0.85 -0.4 422,087 + ABI39_RS01370 0.85 -1.3 422,107 - ABI39_RS01370 0.87 -0.5 422,313 + +2.4 422,364 - ABI39_RS01375 0.11 +0.6 422,548 - ABI39_RS01375 0.26 +0.2 422,553 - ABI39_RS01375 0.27 +1.6 422,619 + ABI39_RS01375 0.32 -0.3 422,650 - ABI39_RS01375 0.35 +1.2 422,708 - ABI39_RS01375 0.40 +0.7 422,723 + ABI39_RS01375 0.41 +1.2 422,835 - ABI39_RS01375 0.51 -0.5 423,050 - ABI39_RS01375 0.69 -0.1 423,076 + ABI39_RS01375 0.71 +0.3 423,080 - ABI39_RS01375 0.72 +1.6 423,207 - ABI39_RS01375 0.82 -0.2
Or see this region's nucleotide sequence