Strain Fitness in Variovorax sp. SCN45 around GFF99

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
124,853	+				-0.7
124,854	-				+0.1
124,854	-				-0.1
125,194	+		GFF99	0.61	-1.6
125,194	+		GFF99	0.61	+0.1
125,194	+		GFF99	0.61	-1.3
125,360	+				-1.0
125,360	+				-0.0
125,547	+		GFF100	0.20	-0.9
125,548	-		GFF100	0.20	-0.4
125,548	-		GFF100	0.20	+0.1
125,548	-		GFF100	0.20	+2.7
125,548	-		GFF100	0.20	+0.6
125,651	-		GFF100	0.35	+0.1
125,958	+		GFF100	0.79	-1.2
125,958	+		GFF100	0.79	-0.5
125,958	+		GFF100	0.79	+1.3
125,958	+		GFF100	0.79	+0.0
125,958	+		GFF100	0.79	+0.1
125,959	-		GFF100	0.79	-0.6
125,959	-		GFF100	0.79	-0.2
125,984	-		GFF100	0.83	+0.1
126,248	-				-0.8