Strain Fitness in Variovorax sp. SCN45 around GFF942

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF940 and GFF941 are separated by 112 nucleotidesGFF941 and GFF942 overlap by 4 nucleotidesGFF942 and GFF943 are separated by 19 nucleotides GFF940 - Permease of the drug/metabolite transporter (DMT) superfamily, at 253,484 to 254,392 GFF940 GFF941 - Transporter, LysE family, at 254,505 to 255,143 GFF941 GFF942 - Iron-sulfur cluster-binding protein, at 255,140 to 255,775 GFF942 GFF943 - Intracellular PHB depolymerase, at 255,795 to 257,237 GFF943 Position (kb) 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.171 kb on + strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.172 kb on - strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.210 kb on + strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.211 kb on - strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.255 kb on + strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.256 kb on - strand, within GFF940at 254.261 kb on + strand, within GFF940at 254.334 kb on - strandat 254.377 kb on - strandat 254.506 kb on + strandat 254.528 kb on + strandat 254.529 kb on - strandat 254.529 kb on - strandat 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.635 kb on + strand, within GFF941at 254.636 kb on - strand, within GFF941at 254.636 kb on - strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.689 kb on + strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.690 kb on - strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.874 kb on + strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.875 kb on - strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.899 kb on + strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.900 kb on - strand, within GFF941at 254.919 kb on + strand, within GFF941at 254.920 kb on - strand, within GFF941at 254.920 kb on - strand, within GFF941at 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.118 kb on + strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.119 kb on - strandat 255.309 kb on + strand, within GFF942at 255.310 kb on - strand, within GFF942at 255.310 kb on - strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.693 kb on + strand, within GFF942at 255.694 kb on - strand, within GFF942at 255.694 kb on - strand, within GFF942at 255.694 kb on - strand, within GFF942at 256.015 kb on + strand, within GFF943at 256.054 kb on + strand, within GFF943at 256.054 kb on + strand, within GFF943at 256.078 kb on + strand, within GFF943at 256.079 kb on - strand, within GFF943at 256.079 kb on - strand, within GFF943at 256.079 kb on - strand, within GFF943at 256.079 kb on - strand, within GFF943at 256.079 kb on - strand, within GFF943at 256.278 kb on + strand, within GFF943at 256.278 kb on + strand, within GFF943at 256.279 kb on - strand, within GFF943at 256.279 kb on - strand, within GFF943at 256.279 kb on - strand, within GFF943at 256.279 kb on - strand, within GFF943at 256.279 kb on - strand, within GFF943at 256.300 kb on + strand, within GFF943at 256.300 kb on + strand, within GFF943at 256.300 kb on + strand, within GFF943at 256.300 kb on + strand, within GFF943at 256.300 kb on + strand, within GFF943at 256.301 kb on - strand, within GFF943at 256.301 kb on - strand, within GFF943at 256.301 kb on - strand, within GFF943at 256.301 kb on - strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.303 kb on + strand, within GFF943at 256.304 kb on - strand, within GFF943at 256.304 kb on - strand, within GFF943at 256.304 kb on - strand, within GFF943at 256.304 kb on - strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.333 kb on + strand, within GFF943at 256.334 kb on - strand, within GFF943at 256.342 kb on + strand, within GFF943at 256.342 kb on + strand, within GFF943at 256.342 kb on + strand, within GFF943at 256.343 kb on - strand, within GFF943at 256.343 kb on - strand, within GFF943at 256.343 kb on - strand, within GFF943at 256.399 kb on + strand, within GFF943at 256.399 kb on + strand, within GFF943at 256.400 kb on - strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.405 kb on + strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.406 kb on - strand, within GFF943at 256.472 kb on - strand, within GFF943at 256.513 kb on + strand, within GFF943at 256.513 kb on + strand, within GFF943at 256.514 kb on - strand, within GFF943at 256.514 kb on - strand, within GFF943at 256.514 kb on - strand, within GFF943at 256.714 kb on + strand, within GFF943at 256.715 kb on - strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.750 kb on + strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.751 kb on - strand, within GFF943at 256.759 kb on + strand, within GFF943at 256.759 kb on + strand, within GFF943at 256.759 kb on + strand, within GFF943at 256.759 kb on + strand, within GFF943at 256.759 kb on + strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943at 256.760 kb on - strand, within GFF943

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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254,171 + GFF940 0.76 -0.2
254,171 + GFF940 0.76 -0.2
254,171 + GFF940 0.76 -0.2
254,171 + GFF940 0.76 -0.7
254,171 + GFF940 0.76 +0.4
254,171 + GFF940 0.76 -0.6
254,172 - GFF940 0.76 -0.1
254,172 - GFF940 0.76 +0.0
254,172 - GFF940 0.76 -0.2
254,210 + GFF940 0.80 -0.5
254,210 + GFF940 0.80 +0.5
254,210 + GFF940 0.80 -1.2
254,210 + GFF940 0.80 -0.8
254,210 + GFF940 0.80 +1.4
254,210 + GFF940 0.80 -0.3
254,210 + GFF940 0.80 +1.2
254,210 + GFF940 0.80 +0.2
254,210 + GFF940 0.80 -0.2
254,210 + GFF940 0.80 -0.1
254,211 - GFF940 0.80 -0.3
254,211 - GFF940 0.80 -0.4
254,211 - GFF940 0.80 +0.9
254,211 - GFF940 0.80 -0.5
254,211 - GFF940 0.80 -0.6
254,211 - GFF940 0.80 +0.0
254,211 - GFF940 0.80 -0.4
254,211 - GFF940 0.80 -0.6
254,211 - GFF940 0.80 -0.2
254,211 - GFF940 0.80 +0.1
254,211 - GFF940 0.80 -0.4
254,211 - GFF940 0.80 -0.6
254,255 + GFF940 0.85 -0.2
254,255 + GFF940 0.85 -0.5
254,255 + GFF940 0.85 -1.3
254,255 + GFF940 0.85 +0.6
254,255 + GFF940 0.85 -0.5
254,256 - GFF940 0.85 +0.2
254,256 - GFF940 0.85 +0.4
254,256 - GFF940 0.85 -0.7
254,256 - GFF940 0.85 -0.1
254,256 - GFF940 0.85 +0.5
254,261 + GFF940 0.85 +0.2
254,334 - +0.3
254,377 - -0.2
254,506 + -0.3
254,528 + +0.8
254,529 - -0.2
254,529 - -0.2
254,635 + GFF941 0.20 -0.9
254,635 + GFF941 0.20 -0.6
254,635 + GFF941 0.20 +2.4
254,635 + GFF941 0.20 -0.9
254,636 - GFF941 0.21 -1.0
254,636 - GFF941 0.21 -0.5
254,689 + GFF941 0.29 +0.0
254,689 + GFF941 0.29 -0.0
254,689 + GFF941 0.29 -0.3
254,690 - GFF941 0.29 +0.2
254,690 - GFF941 0.29 -0.2
254,690 - GFF941 0.29 -0.5
254,690 - GFF941 0.29 -0.1
254,874 + GFF941 0.58 +0.2
254,874 + GFF941 0.58 -0.6
254,874 + GFF941 0.58 -0.7
254,874 + GFF941 0.58 -1.2
254,874 + GFF941 0.58 -0.6
254,875 - GFF941 0.58 -0.2
254,875 - GFF941 0.58 -0.4
254,875 - GFF941 0.58 -0.4
254,875 - GFF941 0.58 -0.3
254,875 - GFF941 0.58 +0.0
254,899 + GFF941 0.62 -0.6
254,899 + GFF941 0.62 -0.4
254,899 + GFF941 0.62 +0.3
254,900 - GFF941 0.62 -0.3
254,900 - GFF941 0.62 +1.4
254,900 - GFF941 0.62 +0.3
254,900 - GFF941 0.62 +0.4
254,900 - GFF941 0.62 -0.5
254,900 - GFF941 0.62 +1.3
254,900 - GFF941 0.62 +0.4
254,919 + GFF941 0.65 -0.2
254,920 - GFF941 0.65 -0.1
254,920 - GFF941 0.65 +0.8
255,118 + +0.4
255,118 + -1.2
255,118 + +0.1
255,118 + +0.0
255,118 + -0.0
255,118 + -0.7
255,118 + -0.0
255,118 + +0.4
255,118 + -0.3
255,118 + -1.2
255,118 + +0.0
255,118 + +0.1
255,118 + -0.5
255,118 + +0.1
255,118 + -0.3
255,118 + +1.0
255,118 + +1.4
255,118 + -0.7
255,118 + -0.1
255,118 + -0.6
255,118 + +0.7
255,118 + +0.2
255,118 + +0.2
255,118 + -0.7
255,118 + +0.7
255,119 - +0.5
255,119 - +0.4
255,119 - -0.6
255,119 - -1.2
255,119 - -1.0
255,119 - -0.6
255,119 - +0.2
255,119 - -0.7
255,119 - -0.4
255,119 - +0.5
255,119 - -0.1
255,119 - +0.3
255,119 - +0.5
255,119 - -0.3
255,119 - -0.5
255,119 - -0.3
255,119 - -0.2
255,119 - -0.7
255,119 - -0.1
255,119 - -0.7
255,119 - +0.5
255,119 - -0.6
255,119 - +0.3
255,119 - -0.2
255,309 + GFF942 0.27 -0.2
255,310 - GFF942 0.27 +1.4
255,310 - GFF942 0.27 +0.4
255,693 + GFF942 0.87 -0.1
255,693 + GFF942 0.87 -0.1
255,693 + GFF942 0.87 -0.4
255,693 + GFF942 0.87 -0.4
255,693 + GFF942 0.87 -1.4
255,693 + GFF942 0.87 +0.3
255,693 + GFF942 0.87 -0.2
255,694 - GFF942 0.87 +0.8
255,694 - GFF942 0.87 +1.2
255,694 - GFF942 0.87 +1.4
256,015 + GFF943 0.15 -1.4
256,054 + GFF943 0.18 -1.2
256,054 + GFF943 0.18 -0.8
256,078 + GFF943 0.20 +0.0
256,079 - GFF943 0.20 -1.0
256,079 - GFF943 0.20 -0.7
256,079 - GFF943 0.20 -1.7
256,079 - GFF943 0.20 +0.1
256,079 - GFF943 0.20 -0.4
256,278 + GFF943 0.33 -0.9
256,278 + GFF943 0.33 -0.1
256,279 - GFF943 0.34 -0.4
256,279 - GFF943 0.34 -0.5
256,279 - GFF943 0.34 +0.1
256,279 - GFF943 0.34 -0.8
256,279 - GFF943 0.34 -0.8
256,300 + GFF943 0.35 -0.5
256,300 + GFF943 0.35 -0.5
256,300 + GFF943 0.35 -1.6
256,300 + GFF943 0.35 -1.7
256,300 + GFF943 0.35 +0.8
256,301 - GFF943 0.35 +0.1
256,301 - GFF943 0.35 +0.1
256,301 - GFF943 0.35 -0.4
256,301 - GFF943 0.35 -0.3
256,303 + GFF943 0.35 +0.8
256,303 + GFF943 0.35 -0.1
256,303 + GFF943 0.35 +0.6
256,303 + GFF943 0.35 -0.7
256,303 + GFF943 0.35 +0.4
256,303 + GFF943 0.35 -0.5
256,304 - GFF943 0.35 -1.2
256,304 - GFF943 0.35 -0.3
256,304 - GFF943 0.35 -0.6
256,304 - GFF943 0.35 -0.5
256,333 + GFF943 0.37 -0.9
256,333 + GFF943 0.37 -0.4
256,333 + GFF943 0.37 -0.4
256,333 + GFF943 0.37 -1.0
256,333 + GFF943 0.37 -0.6
256,333 + GFF943 0.37 -1.1
256,333 + GFF943 0.37 -0.8
256,333 + GFF943 0.37 +0.5
256,334 - GFF943 0.37 -0.4
256,342 + GFF943 0.38 -1.2
256,342 + GFF943 0.38 -0.0
256,342 + GFF943 0.38 +1.1
256,343 - GFF943 0.38 -0.6
256,343 - GFF943 0.38 -0.9
256,343 - GFF943 0.38 -0.8
256,399 + GFF943 0.42 +0.1
256,399 + GFF943 0.42 +0.4
256,400 - GFF943 0.42 -1.5
256,405 + GFF943 0.42 -1.0
256,405 + GFF943 0.42 +0.2
256,405 + GFF943 0.42 -1.5
256,405 + GFF943 0.42 -0.4
256,405 + GFF943 0.42 +0.8
256,405 + GFF943 0.42 -1.4
256,405 + GFF943 0.42 -1.6
256,406 - GFF943 0.42 +0.2
256,406 - GFF943 0.42 -0.9
256,406 - GFF943 0.42 -0.6
256,406 - GFF943 0.42 -0.4
256,406 - GFF943 0.42 +2.2
256,406 - GFF943 0.42 +0.0
256,472 - GFF943 0.47 -0.4
256,513 + GFF943 0.50 -1.4
256,513 + GFF943 0.50 -0.5
256,514 - GFF943 0.50 +0.3
256,514 - GFF943 0.50 -2.8
256,514 - GFF943 0.50 -0.6
256,714 + GFF943 0.64 +0.7
256,715 - GFF943 0.64 -0.7
256,750 + GFF943 0.66 -0.5
256,750 + GFF943 0.66 -0.8
256,750 + GFF943 0.66 +0.1
256,750 + GFF943 0.66 -0.4
256,750 + GFF943 0.66 -0.7
256,750 + GFF943 0.66 -1.3
256,750 + GFF943 0.66 -1.0
256,751 - GFF943 0.66 +0.1
256,751 - GFF943 0.66 -0.7
256,751 - GFF943 0.66 -0.5
256,751 - GFF943 0.66 -0.6
256,751 - GFF943 0.66 +0.0
256,751 - GFF943 0.66 +0.0
256,751 - GFF943 0.66 +0.2
256,759 + GFF943 0.67 -1.6
256,759 + GFF943 0.67 +0.3
256,759 + GFF943 0.67 -1.4
256,759 + GFF943 0.67 -1.1
256,759 + GFF943 0.67 -0.6
256,760 - GFF943 0.67 +0.1
256,760 - GFF943 0.67 -0.7
256,760 - GFF943 0.67 +1.4
256,760 - GFF943 0.67 -0.2
256,760 - GFF943 0.67 +0.0
256,760 - GFF943 0.67 +0.0
256,760 - GFF943 0.67 -0.6
256,760 - GFF943 0.67 -1.0

Or see this region's nucleotide sequence