Strain Fitness in Variovorax sp. SCN45 around GFF7226

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
6,826	+		GFF7225	0.39	-2.5
6,826	+		GFF7225	0.39	+1.4
6,826	+		GFF7225	0.39	-1.0
6,827	-		GFF7225	0.39	+1.7
6,928	+		GFF7225	0.49	-0.2
6,928	+		GFF7225	0.49	-0.3
6,929	-		GFF7225	0.49	-0.2
6,929	-		GFF7225	0.49	-0.8
6,929	-		GFF7225	0.49	-1.1
6,929	-		GFF7225	0.49	+1.3
6,929	-		GFF7225	0.49	+0.7
6,929	-		GFF7225	0.49	-0.9
6,929	-		GFF7225	0.49	+0.3
6,982	+		GFF7225	0.55	-0.5
6,983	-		GFF7225	0.55	+0.7
7,240	+		GFF7225	0.81	-0.3
7,587	+		GFF7226	0.11	-1.9
7,587	+		GFF7226	0.11	+0.1
7,587	+		GFF7226	0.11	-0.9
7,587	+		GFF7226	0.11	-0.0
7,588	-		GFF7226	0.11	+1.2
7,588	-		GFF7226	0.11	+0.1
7,588	-		GFF7226	0.11	+0.7
7,713	+		GFF7226	0.26	-0.3
7,714	-		GFF7226	0.26	+0.7
7,714	-		GFF7226	0.26	+0.2
7,714	-		GFF7226	0.26	+0.2
8,144	+		GFF7226	0.77	+0.3
8,144	+		GFF7226	0.77	-0.5
8,144	+		GFF7226	0.77	-0.1
8,145	-		GFF7226	0.77	-0.5
8,145	-		GFF7226	0.77	+1.4
8,145	-		GFF7226	0.77	+0.6
8,638	+				-0.5
8,639	-				-0.7
8,703	+				+0.3
8,704	-				-1.5
8,875	+				-1.5
8,875	+				-0.7
8,876	-				+0.4
9,127	+		GFF7228	0.18	-0.7
9,127	+		GFF7228	0.18	+0.8
9,128	-		GFF7228	0.18	-0.9
9,128	-		GFF7228	0.18	-0.5