Strain Fitness in Variovorax sp. SCN45 around GFF7180

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7179 and GFF7180 are separated by 346 nucleotidesGFF7180 and GFF7181 are separated by 273 nucleotides GFF7179 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 42,911 to 44,308 GFF7179 GFF7180 - no description, at 44,655 to 45,350 GFF7180 GFF7181 - no description, at 45,624 to 45,743 GFF7181 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2at 43.725 kb on - strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.964 kb on + strand, within GFF7179at 43.965 kb on - strand, within GFF7179at 43.965 kb on - strand, within GFF7179at 43.965 kb on - strand, within GFF7179at 43.974 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.976 kb on + strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 43.977 kb on - strand, within GFF7179at 44.030 kb on + strand, within GFF7179at 44.031 kb on - strand, within GFF7179at 44.031 kb on - strand, within GFF7179at 44.031 kb on - strand, within GFF7179at 44.156 kb on + strand, within GFF7179at 44.156 kb on + strand, within GFF7179at 44.156 kb on + strand, within GFF7179at 44.156 kb on + strand, within GFF7179at 44.156 kb on + strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.157 kb on - strand, within GFF7179at 44.404 kb on + strandat 44.404 kb on + strandat 44.404 kb on + strandat 44.405 kb on - strandat 44.405 kb on - strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.410 kb on + strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.411 kb on - strandat 44.606 kb on - strandat 44.617 kb on + strandat 44.617 kb on + strandat 44.618 kb on - strandat 44.641 kb on + strandat 44.641 kb on + strandat 44.641 kb on + strandat 44.641 kb on + strandat 44.641 kb on + strandat 44.641 kb on + strandat 44.642 kb on - strandat 44.642 kb on - strandat 44.642 kb on - strandat 44.642 kb on - strandat 44.704 kb on + strandat 44.705 kb on - strandat 45.135 kb on + strand, within GFF7180at 45.136 kb on - strand, within GFF7180at 45.296 kb on + strandat 45.296 kb on + strandat 45.296 kb on + strandat 45.296 kb on + strandat 45.297 kb on - strandat 45.297 kb on - strandat 45.297 kb on - strandat 45.297 kb on - strandat 45.297 kb on - strandat 45.335 kb on + strandat 45.377 kb on + strandat 45.377 kb on + strandat 45.384 kb on + strandat 45.384 kb on + strandat 45.384 kb on + strandat 45.385 kb on - strandat 45.385 kb on - strandat 45.385 kb on - strandat 45.385 kb on - strandat 45.421 kb on - strandat 45.441 kb on + strandat 45.442 kb on - strandat 45.442 kb on - strandat 45.479 kb on - strandat 45.479 kb on - strandat 45.479 kb on - strandat 45.509 kb on + strandat 45.509 kb on + strandat 45.509 kb on + strandat 45.509 kb on + strandat 45.510 kb on - strandat 45.510 kb on - strandat 45.510 kb on - strandat 45.510 kb on - strandat 45.510 kb on - strandat 45.537 kb on + strandat 45.538 kb on - strandat 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.642 kb on + strand, within GFF7181at 45.643 kb on - strand, within GFF7181at 45.643 kb on - strand, within GFF7181at 45.643 kb on - strand, within GFF7181at 45.643 kb on - strand, within GFF7181at 45.710 kb on - strand, within GFF7181

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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43,725 - GFF7179 0.58 +0.6
43,790 + GFF7179 0.63 -1.6
43,790 + GFF7179 0.63 +0.1
43,790 + GFF7179 0.63 -1.3
43,790 + GFF7179 0.63 +0.3
43,791 - GFF7179 0.63 +0.4
43,791 - GFF7179 0.63 +0.2
43,791 - GFF7179 0.63 -0.3
43,791 - GFF7179 0.63 +0.5
43,964 + GFF7179 0.75 +0.3
43,965 - GFF7179 0.75 -0.9
43,965 - GFF7179 0.75 +0.0
43,965 - GFF7179 0.75 -0.1
43,974 + GFF7179 0.76 -2.1
43,976 + GFF7179 0.76 +0.6
43,976 + GFF7179 0.76 -0.1
43,976 + GFF7179 0.76 -0.0
43,976 + GFF7179 0.76 -1.2
43,976 + GFF7179 0.76 -0.7
43,976 + GFF7179 0.76 +0.5
43,976 + GFF7179 0.76 -0.3
43,977 - GFF7179 0.76 -1.0
43,977 - GFF7179 0.76 -0.6
43,977 - GFF7179 0.76 -0.9
43,977 - GFF7179 0.76 -0.6
43,977 - GFF7179 0.76 +0.1
43,977 - GFF7179 0.76 -0.1
43,977 - GFF7179 0.76 -0.6
43,977 - GFF7179 0.76 -0.1
43,977 - GFF7179 0.76 +0.0
43,977 - GFF7179 0.76 +0.8
43,977 - GFF7179 0.76 +2.1
44,030 + GFF7179 0.80 -0.4
44,031 - GFF7179 0.80 -0.9
44,031 - GFF7179 0.80 -1.1
44,031 - GFF7179 0.80 -0.1
44,156 + GFF7179 0.89 -0.8
44,156 + GFF7179 0.89 -0.6
44,156 + GFF7179 0.89 +0.3
44,156 + GFF7179 0.89 -0.6
44,156 + GFF7179 0.89 +0.3
44,157 - GFF7179 0.89 -0.9
44,157 - GFF7179 0.89 -0.5
44,157 - GFF7179 0.89 -1.0
44,157 - GFF7179 0.89 -0.3
44,157 - GFF7179 0.89 -0.4
44,157 - GFF7179 0.89 +0.2
44,157 - GFF7179 0.89 -0.4
44,157 - GFF7179 0.89 -1.0
44,157 - GFF7179 0.89 -0.6
44,157 - GFF7179 0.89 -1.3
44,157 - GFF7179 0.89 -1.9
44,157 - GFF7179 0.89 -1.1
44,404 + -1.0
44,404 + +1.0
44,404 + +1.3
44,405 - -0.2
44,405 - +0.1
44,410 + -1.8
44,410 + -0.1
44,410 + -0.8
44,411 - -0.3
44,411 - -1.6
44,411 - -0.6
44,411 - -0.2
44,606 - +1.2
44,617 + +0.6
44,617 + -0.8
44,618 - +0.2
44,641 + -0.5
44,641 + -1.6
44,641 + -2.1
44,641 + -0.2
44,641 + -0.2
44,641 + +1.0
44,642 - -0.7
44,642 - -1.3
44,642 - +2.3
44,642 - -0.5
44,704 + -0.1
44,705 - +0.7
45,135 + GFF7180 0.69 -0.4
45,136 - GFF7180 0.69 -1.3
45,296 + -0.8
45,296 + -0.3
45,296 + +0.4
45,296 + +0.6
45,297 - +0.0
45,297 - -0.2
45,297 - +0.3
45,297 - -0.2
45,297 - +0.3
45,335 + +0.5
45,377 + +1.7
45,377 + +0.4
45,384 + -0.6
45,384 + -0.5
45,384 + -0.1
45,385 - -0.1
45,385 - +0.6
45,385 - -0.3
45,385 - +0.3
45,421 - +1.2
45,441 + -0.9
45,442 - -0.2
45,442 - +1.3
45,479 - -0.8
45,479 - +0.4
45,479 - -0.6
45,509 + +0.3
45,509 + +0.9
45,509 + -0.3
45,509 + +0.4
45,510 - -0.3
45,510 - +0.3
45,510 - +1.3
45,510 - +0.6
45,510 - +0.2
45,537 + -0.3
45,538 - +0.4
45,642 + GFF7181 0.15 -1.3
45,642 + GFF7181 0.15 +0.1
45,642 + GFF7181 0.15 -0.3
45,642 + GFF7181 0.15 +0.6
45,642 + GFF7181 0.15 -0.7
45,642 + GFF7181 0.15 +0.2
45,642 + GFF7181 0.15 -0.5
45,642 + GFF7181 0.15 -1.2
45,643 - GFF7181 0.16 +0.4
45,643 - GFF7181 0.16 +0.6
45,643 - GFF7181 0.16 -0.2
45,643 - GFF7181 0.16 +0.1
45,710 - GFF7181 0.72 -0.1

Or see this region's nucleotide sequence