Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7169 and GFF7170 are separated by 88 nucleotides GFF7170 and GFF7171 are separated by 112 nucleotides
GFF7169 - BUG/TctC family periplasmic protein, at 32,826 to 33,860
GFF7169
GFF7170 - D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83), at 33,949 to 35,040
GFF7170
GFF7171 - Transcriptional regulator DmlR, LysR family, at 35,153 to 36,091
GFF7171
Position (kb) 33
34
35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 33.247 kb on + strand, within GFF7169 at 33.247 kb on + strand, within GFF7169 at 33.247 kb on + strand, within GFF7169 at 33.247 kb on + strand, within GFF7169 at 33.247 kb on + strand, within GFF7169 at 33.247 kb on + strand, within GFF7169 at 33.248 kb on - strand, within GFF7169 at 33.248 kb on - strand, within GFF7169 at 33.248 kb on - strand, within GFF7169 at 33.335 kb on - strand, within GFF7169 at 33.335 kb on - strand, within GFF7169 at 33.475 kb on + strand, within GFF7169 at 33.490 kb on + strand, within GFF7169 at 33.490 kb on + strand, within GFF7169 at 33.490 kb on + strand, within GFF7169 at 33.490 kb on + strand, within GFF7169 at 33.539 kb on - strand, within GFF7169 at 33.539 kb on - strand, within GFF7169 at 33.565 kb on + strand, within GFF7169 at 33.565 kb on + strand, within GFF7169 at 33.565 kb on + strand, within GFF7169 at 33.566 kb on - strand, within GFF7169 at 33.566 kb on - strand, within GFF7169 at 33.566 kb on - strand, within GFF7169 at 33.881 kb on + strand at 33.881 kb on + strand at 33.881 kb on + strand at 33.881 kb on + strand at 33.881 kb on + strand at 33.882 kb on - strand at 33.882 kb on - strand at 33.909 kb on + strand at 34.625 kb on + strand, within GFF7170 at 34.625 kb on + strand, within GFF7170 at 34.626 kb on - strand, within GFF7170 at 34.737 kb on - strand, within GFF7170 at 34.848 kb on + strand, within GFF7170 at 34.889 kb on + strand, within GFF7170 at 34.889 kb on + strand, within GFF7170 at 34.890 kb on - strand, within GFF7170 at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.030 kb on + strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.031 kb on - strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.076 kb on + strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.077 kb on - strand at 35.123 kb on + strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.124 kb on - strand at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.354 kb on + strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.355 kb on - strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.672 kb on + strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.673 kb on - strand, within GFF7171 at 35.756 kb on + strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.757 kb on - strand, within GFF7171 at 35.889 kb on + strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.890 kb on - strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.915 kb on + strand, within GFF7171 at 35.916 kb on - strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.954 kb on + strand, within GFF7171 at 35.955 kb on - strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.978 kb on + strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171 at 35.979 kb on - strand, within GFF7171
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 33,247 + GFF7169 0.41 -0.4 33,247 + GFF7169 0.41 -1.5 33,247 + GFF7169 0.41 -0.2 33,247 + GFF7169 0.41 -1.4 33,247 + GFF7169 0.41 -0.1 33,247 + GFF7169 0.41 -1.6 33,248 - GFF7169 0.41 -0.6 33,248 - GFF7169 0.41 +0.1 33,248 - GFF7169 0.41 +0.5 33,335 - GFF7169 0.49 -2.0 33,335 - GFF7169 0.49 +0.1 33,475 + GFF7169 0.63 +0.2 33,490 + GFF7169 0.64 +1.1 33,490 + GFF7169 0.64 -0.1 33,490 + GFF7169 0.64 -1.0 33,490 + GFF7169 0.64 -0.4 33,539 - GFF7169 0.69 -0.0 33,539 - GFF7169 0.69 -0.3 33,565 + GFF7169 0.71 -0.0 33,565 + GFF7169 0.71 +2.2 33,565 + GFF7169 0.71 -0.1 33,566 - GFF7169 0.71 -0.1 33,566 - GFF7169 0.71 +0.6 33,566 - GFF7169 0.71 -0.4 33,881 + -0.6 33,881 + -0.4 33,881 + +0.3 33,881 + +0.7 33,881 + -2.1 33,882 - -0.7 33,882 - -0.7 33,909 + +0.2 34,625 + GFF7170 0.62 +0.1 34,625 + GFF7170 0.62 -0.1 34,626 - GFF7170 0.62 +0.3 34,737 - GFF7170 0.72 -0.3 34,848 + GFF7170 0.82 +0.2 34,889 + GFF7170 0.86 +0.2 34,889 + GFF7170 0.86 +0.2 34,890 - GFF7170 0.86 -0.2 35,030 + +0.9 35,030 + -0.3 35,030 + -0.4 35,030 + -1.4 35,030 + +0.5 35,030 + +0.1 35,030 + +0.6 35,030 + +0.2 35,030 + +1.2 35,030 + -0.0 35,030 + +1.3 35,031 - -0.4 35,031 - +1.5 35,031 - +0.2 35,031 - -0.4 35,031 - -0.6 35,076 + +0.0 35,076 + -1.1 35,076 + -0.2 35,076 + -0.9 35,076 + -0.5 35,076 + +1.6 35,076 + -1.6 35,076 + -0.8 35,076 + +0.7 35,076 + +0.2 35,076 + +0.2 35,076 + -1.1 35,076 + +1.1 35,076 + -0.2 35,076 + -1.0 35,076 + +0.3 35,077 - -0.2 35,077 - +0.6 35,077 - +1.3 35,077 - -1.6 35,077 - -0.7 35,077 - +0.3 35,123 + -0.2 35,124 - -1.1 35,124 - -0.1 35,124 - -1.8 35,124 - +0.6 35,354 + GFF7171 0.21 -0.6 35,354 + GFF7171 0.21 +0.6 35,354 + GFF7171 0.21 -0.2 35,354 + GFF7171 0.21 +1.5 35,354 + GFF7171 0.21 -1.2 35,355 - GFF7171 0.22 -0.3 35,355 - GFF7171 0.22 -0.7 35,355 - GFF7171 0.22 -0.1 35,355 - GFF7171 0.22 +0.1 35,355 - GFF7171 0.22 -0.2 35,355 - GFF7171 0.22 +0.6 35,355 - GFF7171 0.22 +0.1 35,672 + GFF7171 0.55 -0.6 35,672 + GFF7171 0.55 -3.1 35,673 - GFF7171 0.55 +1.5 35,673 - GFF7171 0.55 -0.9 35,756 + GFF7171 0.64 -1.4 35,757 - GFF7171 0.64 -1.4 35,757 - GFF7171 0.64 +0.8 35,889 + GFF7171 0.78 -0.0 35,890 - GFF7171 0.78 +0.7 35,890 - GFF7171 0.78 -0.8 35,890 - GFF7171 0.78 +0.7 35,915 + GFF7171 0.81 -0.4 35,915 + GFF7171 0.81 -0.2 35,915 + GFF7171 0.81 -1.6 35,916 - GFF7171 0.81 -0.7 35,954 + GFF7171 0.85 -0.6 35,954 + GFF7171 0.85 -0.6 35,955 - GFF7171 0.85 -0.4 35,978 + GFF7171 0.88 +0.3 35,978 + GFF7171 0.88 -0.0 35,978 + GFF7171 0.88 -0.6 35,978 + GFF7171 0.88 -1.4 35,978 + GFF7171 0.88 +0.1 35,978 + GFF7171 0.88 +0.1 35,978 + GFF7171 0.88 +0.3 35,978 + GFF7171 0.88 +0.0 35,978 + GFF7171 0.88 -0.1 35,978 + GFF7171 0.88 -0.8 35,978 + GFF7171 0.88 -0.3 35,978 + GFF7171 0.88 -0.8 35,978 + GFF7171 0.88 -0.5 35,979 - GFF7171 0.88 +0.4 35,979 - GFF7171 0.88 -0.1 35,979 - GFF7171 0.88 +0.2 35,979 - GFF7171 0.88 -0.4 35,979 - GFF7171 0.88 -0.1 35,979 - GFF7171 0.88 +1.2 35,979 - GFF7171 0.88 -0.8 35,979 - GFF7171 0.88 -0.4 35,979 - GFF7171 0.88 -0.8
Or see this region's nucleotide sequence