Strain Fitness in Variovorax sp. SCN45 around GFF7030

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
45,265	+		GFF7029	0.38	+0.4
45,276	+		GFF7029	0.39	-0.5
45,276	+		GFF7029	0.39	-0.6
45,276	+		GFF7029	0.39	-0.3
45,277	-		GFF7029	0.39	+0.7
45,278	+		GFF7029	0.39	+0.9
45,279	-		GFF7029	0.39	+0.7
45,279	-		GFF7029	0.39	+0.7
45,309	-		GFF7029	0.41	+1.1
45,355	+		GFF7029	0.44	-0.3
45,356	-		GFF7029	0.44	-0.4
45,435	+		GFF7029	0.49	-0.8
45,435	+		GFF7029	0.49	-0.5
45,435	+		GFF7029	0.49	+0.1
45,435	+		GFF7029	0.49	-0.3
45,435	+		GFF7029	0.49	-0.3
45,435	+		GFF7029	0.49	-0.8
45,436	-		GFF7029	0.49	+0.1
45,436	-		GFF7029	0.49	+1.1
45,436	-		GFF7029	0.49	-0.4
45,436	-		GFF7029	0.49	-1.0
45,460	-		GFF7029	0.51	-0.5
45,486	+		GFF7029	0.52	-0.6
45,486	+		GFF7029	0.52	+0.2
45,487	-		GFF7029	0.52	-0.0
45,487	-		GFF7029	0.52	-0.9
45,527	+		GFF7029	0.55	-1.8
45,527	+		GFF7029	0.55	-0.4
45,528	-		GFF7029	0.55	-0.4
45,554	+		GFF7029	0.57	+1.0
45,554	+		GFF7029	0.57	+0.9
45,555	-		GFF7029	0.57	-1.5
45,555	-		GFF7029	0.57	-0.1
45,555	-		GFF7029	0.57	-1.4
45,555	-		GFF7029	0.57	+0.6
45,555	-		GFF7029	0.57	-2.1
45,654	+		GFF7029	0.63	-0.3
45,655	-		GFF7029	0.63	-0.2
45,686	+		GFF7029	0.65	+0.0
45,686	+		GFF7029	0.65	-0.4
45,732	-		GFF7029	0.68	-0.6
45,761	+		GFF7029	0.70	-1.0
45,779	+		GFF7029	0.71	-1.2
45,780	-		GFF7029	0.71	+0.1
45,799	+		GFF7029	0.72	+1.1
45,800	-		GFF7029	0.72	+0.1
45,800	-		GFF7029	0.72	-1.2
45,800	-		GFF7029	0.72	-0.3
45,803	+		GFF7029	0.73	+0.5
45,804	-		GFF7029	0.73	+0.3
45,835	-		GFF7029	0.75	-0.3
45,960	-		GFF7029	0.83	-0.2
45,963	-		GFF7029	0.83	-0.0
46,040	+		GFF7029	0.88	-0.1
46,047	+		GFF7029	0.88	-0.1
46,047	+		GFF7029	0.88	+0.7
46,047	+		GFF7029	0.88	-0.2
46,047	+		GFF7029	0.88	+0.3
46,047	+		GFF7029	0.88	-0.2
46,047	+		GFF7029	0.88	+0.2
46,048	-		GFF7029	0.88	+0.2
46,048	-		GFF7029	0.88	-0.5
46,048	-		GFF7029	0.88	+0.6
46,048	-		GFF7029	0.88	+0.8
46,048	-		GFF7029	0.88	-0.6
46,048	-		GFF7029	0.88	-0.1
46,061	-		GFF7029	0.89	+0.0
46,066	+		GFF7029	0.89	+0.4
46,066	+		GFF7029	0.89	+0.1
46,066	+		GFF7029	0.89	-0.2
46,067	-		GFF7029	0.90	+0.1
46,067	-		GFF7029	0.90	+0.0
46,151	+				-0.9
46,151	+				-0.3
46,151	+				-0.5
46,152	-				-0.1
46,152	-				-0.8
46,152	-				-1.1
46,152	-				-0.8
46,152	-				-0.6
46,152	-				-0.3
46,152	-				+0.4
46,155	+				+0.7
46,155	+				-1.1
46,155	+				+0.6
46,155	+				-0.0
46,155	+				+0.0
46,156	-				-0.6
46,156	-				-0.6
46,159	+				-1.1
46,159	+				-0.2
46,160	-				+1.7
46,160	-				+0.5
46,257	-				-0.9
46,259	+				-0.0
46,260	-				-0.2
46,260	-				+0.3
46,260	-				-0.1
46,279	+				-2.1
46,279	+				+0.5
46,290	-				+0.4
46,324	+				+1.1
46,324	+				+0.0
46,324	+				+0.7
46,324	+				+0.4
46,325	-				-0.1
46,325	-				+0.4
46,325	-				-0.4
46,325	-				-0.3
46,325	-				-0.7
46,328	+				-0.8
46,329	-				+0.9
46,329	-				+0.6
46,329	-				-0.5
46,343	+				-0.1
46,344	-				-0.1
46,344	-				+0.7
46,344	-				+0.4
46,344	-				+0.1
46,456	+		GFF7030	0.12	+1.1
46,460	+		GFF7030	0.12	-0.9
46,473	+		GFF7030	0.13	+0.0
46,501	+		GFF7030	0.15	-1.8
46,502	-		GFF7030	0.15	-0.5
46,549	-		GFF7030	0.17	-0.8
46,553	-		GFF7030	0.17	-0.6
46,623	+		GFF7030	0.21	-0.7
46,623	+		GFF7030	0.21	+0.4
46,624	-		GFF7030	0.21	+0.1
46,625	+		GFF7030	0.21	+0.2
46,687	+		GFF7030	0.24	-0.2
46,687	+		GFF7030	0.24	-0.6
46,688	-		GFF7030	0.25	+1.3
46,688	-		GFF7030	0.25	-0.0
46,688	-		GFF7030	0.25	-0.7
46,691	+		GFF7030	0.25	-0.1
46,708	+		GFF7030	0.26	+1.2
46,750	+		GFF7030	0.28	-0.9
46,890	+		GFF7030	0.35	+1.9
46,894	-		GFF7030	0.35	-0.8
46,968	+		GFF7030	0.39	-0.8
46,969	-		GFF7030	0.39	-0.4
47,038	+		GFF7030	0.43	+0.9
47,039	-		GFF7030	0.43	+0.8
47,095	+		GFF7030	0.46	+0.2
47,095	+		GFF7030	0.46	-0.9
47,096	-		GFF7030	0.46	-0.5
47,153	+		GFF7030	0.49	+0.1
47,153	+		GFF7030	0.49	-0.0
47,154	-		GFF7030	0.49	-0.1
47,154	-		GFF7030	0.49	+0.7
47,154	-		GFF7030	0.49	+0.7
47,227	+		GFF7030	0.53	+0.1
47,249	+		GFF7030	0.54	-0.2
47,249	+		GFF7030	0.54	-0.3
47,249	+		GFF7030	0.54	-1.0
47,250	-		GFF7030	0.54	+0.0
47,250	-		GFF7030	0.54	-0.1
47,250	-		GFF7030	0.54	-0.3
47,288	-		GFF7030	0.56	-0.6
47,288	-		GFF7030	0.56	-0.3
47,288	-		GFF7030	0.56	+0.0
47,348	-		GFF7030	0.60	+0.9
47,390	+		GFF7030	0.62	-0.3
47,391	-		GFF7030	0.62	-1.1
47,408	-		GFF7030	0.63	-1.1
47,414	-		GFF7030	0.63	-0.3
47,414	-		GFF7030	0.63	-0.9
47,415	+		GFF7030	0.63	-0.6
47,415	+		GFF7030	0.63	-0.2
47,415	+		GFF7030	0.63	-0.8
47,415	+		GFF7030	0.63	-0.6
47,416	-		GFF7030	0.63	-0.3
47,565	-		GFF7030	0.71	-0.8
47,565	-		GFF7030	0.71	-0.1
47,565	-		GFF7030	0.71	+0.5
47,565	-		GFF7030	0.71	-1.1
47,642	+		GFF7030	0.75	-0.6
47,643	-		GFF7030	0.75	-0.6
47,643	-		GFF7030	0.75	-0.5
47,658	+		GFF7030	0.76	+0.0
47,658	+		GFF7030	0.76	-0.8
47,659	-		GFF7030	0.76	+0.9
47,659	-		GFF7030	0.76	-0.1
47,659	-		GFF7030	0.76	-0.6
47,716	+		GFF7030	0.79	+1.4
47,717	-		GFF7030	0.79	-0.0
47,749	+		GFF7030	0.81	+0.1
47,749	+		GFF7030	0.81	-0.2
47,749	+		GFF7030	0.81	-0.4
47,749	+		GFF7030	0.81	+0.2
47,749	+		GFF7030	0.81	+0.4
47,749	+		GFF7030	0.81	-1.5
47,749	+		GFF7030	0.81	-2.0
47,750	-		GFF7030	0.81	+0.5
47,750	-		GFF7030	0.81	+0.4
47,782	-		GFF7030	0.83	+0.5
47,782	-		GFF7030	0.83	+0.6
47,782	-		GFF7030	0.83	+1.6
47,868	+		GFF7030	0.87	-0.2
47,868	+		GFF7030	0.87	+0.4
47,868	+		GFF7030	0.87	-0.6
47,868	+		GFF7030	0.87	-0.6
47,868	+		GFF7030	0.87	+0.2
47,868	+		GFF7030	0.87	-0.0
47,868	+		GFF7030	0.87	+0.3
47,868	+		GFF7030	0.87	-0.7
47,868	+		GFF7030	0.87	+1.7
47,868	+		GFF7030	0.87	+0.0
47,868	+		GFF7030	0.87	+1.7
47,868	+		GFF7030	0.87	-0.5
47,868	+		GFF7030	0.87	+0.7
47,868	+		GFF7030	0.87	-0.0
47,868	+		GFF7030	0.87	-0.1
47,868	+		GFF7030	0.87	-0.5
47,868	+		GFF7030	0.87	-0.3
47,868	+		GFF7030	0.87	+0.5
47,868	+		GFF7030	0.87	-0.5
47,868	+		GFF7030	0.87	+1.1
47,868	+		GFF7030	0.87	+1.1
47,868	+		GFF7030	0.87	+0.1
47,868	+		GFF7030	0.87	-0.3
47,868	+		GFF7030	0.87	+2.3
47,868	+		GFF7030	0.87	+2.1
47,868	+		GFF7030	0.87	+0.4
47,868	+		GFF7030	0.87	-0.2
47,868	+		GFF7030	0.87	+1.0
47,869	-		GFF7030	0.87	+0.1
47,869	-		GFF7030	0.87	-0.5
47,869	-		GFF7030	0.87	-0.0
47,869	-		GFF7030	0.87	-0.1
47,869	-		GFF7030	0.87	-0.0
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	+0.3
47,869	-		GFF7030	0.87	-0.7
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	+0.5
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	+0.1
47,869	-		GFF7030	0.87	-0.9
47,869	-		GFF7030	0.87	+0.1
47,869	-		GFF7030	0.87	+0.6
47,904	+		GFF7030	0.89	+0.0
47,904	+		GFF7030	0.89	-0.8
47,904	+		GFF7030	0.89	-0.1
47,904	+		GFF7030	0.89	+0.4
47,905	-		GFF7030	0.89	-0.8
47,905	-		GFF7030	0.89	+2.3
47,905	-		GFF7030	0.89	+0.5
47,905	-		GFF7030	0.89	+0.1
47,905	-		GFF7030	0.89	+0.1
47,931	+				-0.4
47,931	+				-0.2
47,931	+				-0.2
47,931	+				-1.3
47,931	+				+0.6
47,931	+				+0.7
47,931	+				-0.9
47,931	+				-0.0
47,932	-				+0.0
47,932	-				-0.2
47,932	-				-1.2
47,932	-				+0.3
47,934	+				-0.3
47,934	+				+0.1
47,934	+				-0.4
47,934	+				-0.6
47,934	+				-0.6
47,935	-				-1.6
47,935	-				+0.8
47,935	-				-0.6
47,935	-				-1.5
47,935	-				-0.3
47,935	-				+0.5
47,956	+				-0.8
47,956	+				-0.5
47,956	+				-0.9
47,956	+				-0.8
47,956	+				-0.7
47,956	+				-0.1
47,956	+				-0.1
47,956	+				+0.1
47,957	-				+0.4
47,957	-				+0.7
47,957	-				-1.3
47,957	-				+0.8
47,957	-				-0.1
47,957	-				-0.1
47,957	-				+1.7
47,957	-				-1.3
47,957	-				+0.4
47,957	-				-0.3
47,957	-				-0.4
47,958	+				-0.9
47,958	+				-1.0
47,958	+				-0.6
47,958	+				-0.0
47,958	+				+0.4
47,959	-				-0.5
47,959	-				-0.7
47,959	-				-0.0
47,959	-				-0.8
47,959	-				-0.4
47,959	-				+0.4
47,959	-				-0.2
47,959	-				-0.5
47,959	-				+2.7
47,959	-				-1.0
47,959	-				+0.6
47,959	-				+0.8
47,959	-				-1.0
47,960	+				-1.6
47,960	+				-1.0
47,960	+				-0.7
47,960	+				+0.2
47,960	+				-0.0
47,960	+				-0.9
47,960	+				+1.5
47,960	+				-1.6
47,960	+				-0.6
47,960	+				+0.9
47,960	+				+0.4
47,960	+				+0.6
47,960	+				+0.7
47,960	+				-1.3
47,960	+				+0.1
47,960	+				-0.5
47,960	+				-0.8
47,960	+				-0.4
47,960	+				+0.5
47,960	+				-1.0
47,961	-				+0.2
47,961	-				-0.5
47,961	-				+1.7
47,961	-				-0.3
47,961	-				-1.5
47,961	-				-0.9
47,961	-				-2.1
47,961	-				-0.4
47,961	-				+0.6
47,961	-				+0.4
47,961	-				-0.6
47,961	-				+1.0
47,961	-				-1.6
47,962	+				+1.1
47,962	+				+0.0
47,962	+				-0.3
47,962	+				+0.2
47,962	+				+0.3
47,962	+				-0.9
47,962	+				-0.3
47,962	+				-2.0
47,962	+				-0.1
47,962	+				+0.2
47,962	+				+0.7
47,962	+				+0.9
47,962	+				-1.1
47,963	-				+0.2
47,963	-				-0.3
47,963	-				-0.6
47,963	-				-1.8
47,963	-				-0.2
47,963	-				-1.1
47,963	-				+0.8
47,963	-				-0.3
47,963	-				-0.5
47,963	-				-0.5
47,963	-				-0.5
47,963	-				-0.2
47,963	-				-0.2
47,963	-				+1.7
47,963	-				+1.2
47,963	-				-0.6
47,963	-				-0.5
47,963	-				-0.9
47,963	-				+0.2
47,963	-				+0.2
47,963	-				+0.8
47,963	-				-0.9
47,963	-				-0.9
48,011	+				-0.1
48,012	-				-1.3
48,012	-				-0.5
48,106	-				+0.1
48,144	+				+0.4
48,144	+				-0.3
48,144	+				-0.4
48,145	-				-0.7
48,145	-				+0.1
48,145	-				-0.3
48,145	-				-1.2
48,185	-				-0.9
48,185	-				+0.4
48,202	+				-0.4
48,203	-				-0.1
48,203	-				-0.8
48,203	-				-0.2
48,316	+				-0.3
48,316	+				+0.1
48,317	-				-0.4
48,317	-				-0.9
48,317	-				-0.6
48,317	-				-1.5
48,321	-				-0.2
48,367	+		GFF7031	0.12	+0.3
48,367	+		GFF7031	0.12	-0.7
48,367	+		GFF7031	0.12	+0.2
48,427	-		GFF7031	0.15	-0.1
48,438	+		GFF7031	0.15	-0.4
48,466	-		GFF7031	0.17	+0.7
48,466	-		GFF7031	0.17	-0.0
48,516	-		GFF7031	0.19	-0.4
48,575	+		GFF7031	0.22	+0.0
48,588	+		GFF7031	0.22	+0.1
48,588	+		GFF7031	0.22	-1.8
48,589	-		GFF7031	0.22	+1.7
48,685	+		GFF7031	0.27	+0.4
48,685	+		GFF7031	0.27	-0.9
48,685	+		GFF7031	0.27	+0.1
48,700	+		GFF7031	0.27	-0.0
48,700	+		GFF7031	0.27	+0.3
48,700	+		GFF7031	0.27	-0.1
48,757	+		GFF7031	0.30	-0.6
48,757	+		GFF7031	0.30	-0.4
48,854	+		GFF7031	0.35	-0.6
48,857	-		GFF7031	0.35	-0.2
48,919	-		GFF7031	0.38	+1.4
48,944	-		GFF7031	0.39	-0.8
48,956	-		GFF7031	0.39	-0.0
48,996	+		GFF7031	0.41	+0.4
48,996	+		GFF7031	0.41	-1.9
48,997	-		GFF7031	0.41	-2.6
48,997	-		GFF7031	0.41	+0.5
49,059	+		GFF7031	0.44	+0.7
49,060	-		GFF7031	0.44	-0.5
49,060	-		GFF7031	0.44	+0.1
49,060	-		GFF7031	0.44	+0.3
49,092	+		GFF7031	0.46	+0.1
49,092	+		GFF7031	0.46	-0.2