Strain Fitness in Variovorax sp. SCN45 around GFF7021

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7020 and GFF7021 overlap by 4 nucleotidesGFF7021 and GFF7022 overlap by 4 nucleotides GFF7020 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 37,035 to 38,087 GFF7020 GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121 GFF7021 GFF7022 - Amidohydrolase domain protein, at 39,118 to 40,794 GFF7022 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.409 kb on - strand, within GFF7020at 37.576 kb on + strand, within GFF7020at 37.737 kb on + strand, within GFF7020at 37.738 kb on - strand, within GFF7020at 37.800 kb on + strand, within GFF7020at 38.723 kb on + strand, within GFF7021at 38.724 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.787 kb on - strand, within GFF7021at 38.849 kb on + strand, within GFF7021at 38.849 kb on + strand, within GFF7021at 38.850 kb on - strand, within GFF7021at 39.142 kb on + strandat 39.142 kb on + strandat 39.358 kb on + strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.359 kb on - strand, within GFF7022at 39.520 kb on + strand, within GFF7022at 39.521 kb on - strand, within GFF7022at 39.521 kb on - strand, within GFF7022

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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37,409 - GFF7020 0.36 -0.2
37,576 + GFF7020 0.51 +0.0
37,737 + GFF7020 0.67 -0.4
37,738 - GFF7020 0.67 +0.5
37,800 + GFF7020 0.73 +1.7
38,723 + GFF7021 0.62 -0.3
38,724 - GFF7021 0.62 +1.3
38,787 - GFF7021 0.68 +0.1
38,787 - GFF7021 0.68 +0.3
38,787 - GFF7021 0.68 +0.5
38,787 - GFF7021 0.68 +2.1
38,849 + GFF7021 0.74 +0.0
38,849 + GFF7021 0.74 -0.6
38,850 - GFF7021 0.74 -0.0
39,142 + -0.5
39,142 + -0.9
39,358 + GFF7022 0.14 -2.0
39,359 - GFF7022 0.14 +0.0
39,359 - GFF7022 0.14 -1.0
39,359 - GFF7022 0.14 -0.6
39,359 - GFF7022 0.14 -0.7
39,520 + GFF7022 0.24 -0.2
39,521 - GFF7022 0.24 +2.7
39,521 - GFF7022 0.24 -0.3

Or see this region's nucleotide sequence