Strain Fitness in Variovorax sp. SCN45 around GFF6983

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
621	+		GFF6981	0.42	+0.5
674	+		GFF6981	0.51	+0.5
781	-		GFF6981	0.69	+1.0
909	-				-0.5
930	+				-0.2
1,040	+		GFF6982	0.16	+0.1
1,040	+		GFF6982	0.16	+0.6
1,257	-		GFF6982	0.61	-0.1
1,257	-		GFF6982	0.61	-1.6
1,509	+				-0.3
1,510	-				-0.3
1,510	-				+0.2
1,724	-		GFF6983	0.20	+0.4
1,724	-		GFF6983	0.20	-0.2
1,724	-		GFF6983	0.20	+0.5
2,386	+		GFF6983	0.72	-2.0
2,386	+		GFF6983	0.72	-0.2
2,560	+		GFF6983	0.85	+0.1
2,560	+		GFF6983	0.85	-1.3
2,560	+		GFF6983	0.85	+0.6
2,561	-		GFF6983	0.85	+1.3
2,739	-				-0.6
2,762	+				+0.3
2,921	+		GFF6984	0.20	-0.7
2,922	-		GFF6984	0.20	+0.6
2,980	+		GFF6984	0.29	+0.6
3,022	+		GFF6984	0.35	-0.9
3,022	+		GFF6984	0.35	-0.8
3,023	-		GFF6984	0.35	-1.4
3,023	-		GFF6984	0.35	-0.5
3,131	+		GFF6984	0.51	-1.3
3,382	+		GFF6984	0.87	-0.6
3,410	+				-0.1
3,557	-				+0.3
3,557	-				-0.3
3,557	-				-0.3
3,634	-				-0.4