Strain Fitness in Variovorax sp. SCN45 around GFF6781

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
29,296	+		GFF6780	0.77	-0.5
29,596	+				-1.7
29,597	-				-0.3
29,597	-				-1.7
29,597	-				-0.1
29,605	+				-0.4
29,605	+				+1.0
29,606	-				-0.0
29,665	+				-0.4
29,665	+				+0.5
29,680	+				-0.4
29,680	+				-1.9
29,680	+				+0.2
29,680	+				+0.4
29,681	-				+0.4
29,681	-				-0.1
29,681	-				-1.0
29,681	-				-0.3
29,770	+				-0.4
29,771	-				+0.2
30,064	+		GFF6781	0.16	+0.4
30,065	-		GFF6781	0.17	-2.1
30,065	-		GFF6781	0.17	-1.9
30,065	-		GFF6781	0.17	-0.8
30,132	+		GFF6781	0.20	-2.1
30,292	+		GFF6781	0.29	-1.1
30,293	-		GFF6781	0.29	-1.5
30,293	-		GFF6781	0.29	-1.3
30,592	+		GFF6781	0.46	-0.1
30,592	+		GFF6781	0.46	+0.3
30,592	+		GFF6781	0.46	-0.7
30,592	+		GFF6781	0.46	-0.7
30,593	-		GFF6781	0.46	-0.9
30,755	+		GFF6781	0.55	-0.8
30,771	-		GFF6781	0.56	+1.4
31,039	+		GFF6781	0.71	-0.6
31,120	+		GFF6781	0.76	-0.4
31,120	+		GFF6781	0.76	+0.6
31,120	+		GFF6781	0.76	+1.0
31,121	-		GFF6781	0.76	+0.2
31,121	-		GFF6781	0.76	-1.1
31,130	+		GFF6781	0.76	+1.4
31,133	-		GFF6781	0.76	-1.2
31,133	-		GFF6781	0.76	-0.6
31,349	-		GFF6781	0.88	-0.4
31,358	-		GFF6781	0.89	+0.2
31,625	+				-0.2
31,625	+				-0.3
31,625	+				+0.6
31,625	+				-1.6
31,625	+				-0.5
31,625	+				+0.2
31,625	+				+0.2
31,625	+				-0.6
31,625	+				-0.2
31,626	-				-0.1
31,626	-				+0.7
31,626	-				+0.4
31,626	-				-0.1
31,626	-				-0.3
31,626	-				+0.2
31,626	-				+0.0
31,626	-				+1.4
31,626	-				+0.1
31,627	+				-0.9
31,646	+				-0.2
31,646	+				-0.9
31,647	-				-0.8
31,661	+				-2.0
31,782	-		GFF6782	0.17	-0.9
31,818	-		GFF6782	0.20	+0.4
31,818	-		GFF6782	0.20	-0.1
31,920	-		GFF6782	0.27	+0.1
32,216	+		GFF6782	0.49	+2.4
32,216	+		GFF6782	0.49	+0.1
32,216	+		GFF6782	0.49	-0.6
32,534	+		GFF6782	0.72	+0.4
32,534	+		GFF6782	0.72	+0.4
32,534	+		GFF6782	0.72	-2.3
32,534	+		GFF6782	0.72	-0.1
32,535	-		GFF6782	0.72	+0.6