Strain Fitness in Variovorax sp. SCN45 around GFF6737

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
49,179	+		GFF6736	0.90	-0.4
49,179	+		GFF6736	0.90	+0.3
49,179	+		GFF6736	0.90	+0.8
49,245	+				-0.8
49,246	-				-0.5
49,246	-				-1.4
49,246	-				-0.2
49,246	-				+0.6
49,246	-				-1.3
49,520	-				-1.1
49,575	+				-0.7
49,576	-				-0.1
49,576	-				+0.3
49,576	-				-0.6
49,582	-				-1.9
49,902	-		GFF6737	0.66	-1.2
49,902	-		GFF6737	0.66	+0.1
49,935	-		GFF6737	0.73	-0.8
49,971	+		GFF6737	0.80	-2.0
49,971	+		GFF6737	0.80	-2.0
49,972	-		GFF6737	0.80	-0.3
49,975	+		GFF6737	0.81	+0.2
49,975	+		GFF6737	0.81	-1.5
49,975	+		GFF6737	0.81	+0.2
49,976	-		GFF6737	0.81	+0.5
50,310	+		GFF6738	0.11	-0.6
50,310	+		GFF6738	0.11	-0.2
50,310	+		GFF6738	0.11	+1.6
50,311	-		GFF6738	0.11	-0.2
50,311	-		GFF6738	0.11	-0.5
50,311	-		GFF6738	0.11	+0.6
50,311	-		GFF6738	0.11	-0.5
50,460	+		GFF6738	0.17	+0.2
50,460	+		GFF6738	0.17	-0.8
50,460	+		GFF6738	0.17	-1.0
50,460	+		GFF6738	0.17	-0.3
50,461	-		GFF6738	0.18	-0.8