Strain Fitness in Variovorax sp. SCN45 around GFF6566

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6565 and GFF6566 are separated by 188 nucleotidesGFF6566 and GFF6567 overlap by 4 nucleotides GFF6565 - hypothetical protein, at 3,498 to 4,742 GFF6565 GFF6566 - hypothetical protein, at 4,931 to 7,594 GFF6566 GFF6567 - hypothetical protein, at 7,591 to 9,264 GFF6567 Position (kb) 4 5 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 4.150 kb on - strand, within GFF6565at 4.150 kb on - strand, within GFF6565at 4.166 kb on - strand, within GFF6565at 4.245 kb on + strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.246 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.260 kb on - strand, within GFF6565at 4.426 kb on + strand, within GFF6565at 4.427 kb on - strand, within GFF6565at 4.669 kb on - strandat 4.799 kb on + strandat 4.820 kb on + strandat 4.870 kb on - strandat 4.923 kb on + strandat 4.924 kb on - strandat 4.981 kb on - strandat 5.033 kb on + strandat 5.034 kb on - strandat 5.034 kb on - strandat 5.196 kb on + strandat 5.197 kb on - strandat 5.197 kb on - strandat 5.241 kb on + strand, within GFF6566at 5.244 kb on + strand, within GFF6566at 5.267 kb on + strand, within GFF6566at 5.267 kb on + strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.268 kb on - strand, within GFF6566at 5.287 kb on - strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.358 kb on + strand, within GFF6566at 5.359 kb on - strand, within GFF6566at 5.359 kb on - strand, within GFF6566at 5.395 kb on + strand, within GFF6566at 5.539 kb on - strand, within GFF6566at 5.539 kb on - strand, within GFF6566at 5.574 kb on + strand, within GFF6566at 5.574 kb on + strand, within GFF6566at 5.575 kb on - strand, within GFF6566at 5.601 kb on + strand, within GFF6566at 5.896 kb on - strand, within GFF6566at 5.898 kb on + strand, within GFF6566at 5.898 kb on + strand, within GFF6566at 5.898 kb on + strand, within GFF6566at 5.898 kb on + strand, within GFF6566at 5.899 kb on - strand, within GFF6566at 5.899 kb on - strand, within GFF6566at 5.940 kb on + strand, within GFF6566at 6.189 kb on + strand, within GFF6566at 6.193 kb on - strand, within GFF6566at 6.283 kb on - strand, within GFF6566at 6.379 kb on - strand, within GFF6566at 6.457 kb on - strand, within GFF6566at 6.885 kb on + strand, within GFF6566at 6.885 kb on + strand, within GFF6566at 6.886 kb on - strand, within GFF6566at 6.987 kb on + strand, within GFF6566at 6.987 kb on + strand, within GFF6566at 6.988 kb on - strand, within GFF6566at 7.209 kb on + strand, within GFF6566at 7.210 kb on - strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.234 kb on + strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.235 kb on - strand, within GFF6566at 7.281 kb on + strand, within GFF6566at 7.281 kb on + strand, within GFF6566at 7.312 kb on - strand, within GFF6566at 7.381 kb on + strandat 7.382 kb on - strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.625 kb on + strandat 7.626 kb on - strandat 7.626 kb on - strandat 7.626 kb on - strandat 7.647 kb on - strandat 7.647 kb on - strandat 7.647 kb on - strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.715 kb on + strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.716 kb on - strandat 7.772 kb on + strand, within GFF6567at 7.773 kb on - strand, within GFF6567at 8.171 kb on + strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.172 kb on - strand, within GFF6567at 8.195 kb on + strand, within GFF6567at 8.195 kb on + strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.196 kb on - strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.324 kb on + strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.325 kb on - strand, within GFF6567at 8.360 kb on + strand, within GFF6567at 8.361 kb on - strand, within GFF6567

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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4,150 - GFF6565 0.52 +0.7
4,150 - GFF6565 0.52 +1.4
4,166 - GFF6565 0.54 +0.2
4,245 + GFF6565 0.60 -0.1
4,246 - GFF6565 0.60 +0.2
4,246 - GFF6565 0.60 +0.4
4,246 - GFF6565 0.60 +0.1
4,246 - GFF6565 0.60 -0.4
4,260 - GFF6565 0.61 -0.9
4,260 - GFF6565 0.61 -0.7
4,260 - GFF6565 0.61 -0.4
4,426 + GFF6565 0.75 +0.2
4,427 - GFF6565 0.75 +0.1
4,669 - -0.1
4,799 + -1.1
4,820 + -0.3
4,870 - +0.3
4,923 + -0.4
4,924 - +0.8
4,981 - +0.5
5,033 + +0.3
5,034 - -0.5
5,034 - -0.0
5,196 + -0.4
5,197 - -1.3
5,197 - -0.4
5,241 + GFF6566 0.12 +0.3
5,244 + GFF6566 0.12 -0.6
5,267 + GFF6566 0.13 +0.7
5,267 + GFF6566 0.13 -2.1
5,268 - GFF6566 0.13 +0.5
5,268 - GFF6566 0.13 +0.6
5,268 - GFF6566 0.13 -0.5
5,287 - GFF6566 0.13 -1.5
5,358 + GFF6566 0.16 -0.7
5,358 + GFF6566 0.16 -0.7
5,358 + GFF6566 0.16 +0.1
5,359 - GFF6566 0.16 +0.3
5,359 - GFF6566 0.16 -0.8
5,395 + GFF6566 0.17 +2.0
5,539 - GFF6566 0.23 +0.4
5,539 - GFF6566 0.23 -1.6
5,574 + GFF6566 0.24 -0.2
5,574 + GFF6566 0.24 +0.5
5,575 - GFF6566 0.24 -0.4
5,601 + GFF6566 0.25 -1.6
5,896 - GFF6566 0.36 -1.1
5,898 + GFF6566 0.36 -0.1
5,898 + GFF6566 0.36 +0.6
5,898 + GFF6566 0.36 +0.2
5,898 + GFF6566 0.36 +0.5
5,899 - GFF6566 0.36 +0.1
5,899 - GFF6566 0.36 -2.2
5,940 + GFF6566 0.38 -0.7
6,189 + GFF6566 0.47 -0.2
6,193 - GFF6566 0.47 +1.9
6,283 - GFF6566 0.51 -0.4
6,379 - GFF6566 0.54 +0.3
6,457 - GFF6566 0.57 -0.5
6,885 + GFF6566 0.73 -1.6
6,885 + GFF6566 0.73 +0.2
6,886 - GFF6566 0.73 +1.8
6,987 + GFF6566 0.77 -0.2
6,987 + GFF6566 0.77 -1.2
6,988 - GFF6566 0.77 -0.2
7,209 + GFF6566 0.86 -1.9
7,210 - GFF6566 0.86 -0.8
7,234 + GFF6566 0.86 +0.2
7,234 + GFF6566 0.86 +2.0
7,234 + GFF6566 0.86 -0.3
7,234 + GFF6566 0.86 -1.9
7,235 - GFF6566 0.86 +0.4
7,235 - GFF6566 0.86 +0.1
7,235 - GFF6566 0.86 +0.3
7,281 + GFF6566 0.88 -0.1
7,281 + GFF6566 0.88 +0.1
7,312 - GFF6566 0.89 +1.1
7,381 + -1.0
7,382 - -1.0
7,625 + +0.2
7,625 + -0.8
7,625 + +0.6
7,625 + +0.5
7,626 - +0.2
7,626 - -0.4
7,626 - -0.3
7,647 - -1.9
7,647 - -0.3
7,647 - -0.1
7,715 + -0.4
7,715 + -0.9
7,715 + -0.6
7,715 + -0.5
7,715 + -0.4
7,715 + -0.5
7,715 + -0.8
7,715 + -2.4
7,715 + -0.5
7,715 + -0.3
7,715 + -0.3
7,716 - -0.1
7,716 - +0.5
7,716 - -0.6
7,716 - +0.4
7,716 - +0.9
7,716 - -1.1
7,716 - -1.2
7,716 - +1.4
7,716 - +0.4
7,772 + GFF6567 0.11 -0.2
7,773 - GFF6567 0.11 +0.7
8,171 + GFF6567 0.35 -0.2
8,172 - GFF6567 0.35 +0.4
8,172 - GFF6567 0.35 -0.6
8,172 - GFF6567 0.35 +0.0
8,195 + GFF6567 0.36 +0.0
8,195 + GFF6567 0.36 -0.1
8,196 - GFF6567 0.36 +0.4
8,196 - GFF6567 0.36 -0.1
8,196 - GFF6567 0.36 +0.1
8,196 - GFF6567 0.36 +0.0
8,324 + GFF6567 0.44 -0.3
8,324 + GFF6567 0.44 -0.6
8,324 + GFF6567 0.44 -0.9
8,324 + GFF6567 0.44 -0.2
8,324 + GFF6567 0.44 -1.0
8,324 + GFF6567 0.44 -0.9
8,324 + GFF6567 0.44 +0.2
8,324 + GFF6567 0.44 -1.1
8,324 + GFF6567 0.44 -0.6
8,324 + GFF6567 0.44 -0.3
8,324 + GFF6567 0.44 -0.1
8,325 - GFF6567 0.44 -0.2
8,325 - GFF6567 0.44 -0.2
8,325 - GFF6567 0.44 -0.1
8,325 - GFF6567 0.44 -0.6
8,325 - GFF6567 0.44 +1.4
8,325 - GFF6567 0.44 -0.2
8,325 - GFF6567 0.44 +0.9
8,325 - GFF6567 0.44 -0.1
8,325 - GFF6567 0.44 -0.5
8,325 - GFF6567 0.44 -0.5
8,360 + GFF6567 0.46 -1.2
8,361 - GFF6567 0.46 +0.3

Or see this region's nucleotide sequence