Strain Fitness in Variovorax sp. SCN45 around GFF6549

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF6547 and GFF6548 are separated by 72 nucleotidesGFF6548 and GFF6549 are separated by 22 nucleotidesGFF6549 and GFF6550 are separated by 163 nucleotides GFF6547 - Glutathione S-transferase (EC 2.5.1.18), at 45,163 to 45,867 GFF6547 GFF6548 - hypothetical protein, at 45,940 to 46,593 GFF6548 GFF6549 - no description, at 46,616 to 47,392 GFF6549 GFF6550 - 4'-phosphopantetheinyl transferase (EC 2.7.8.-), at 47,556 to 48,371 GFF6550 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.619 kb on + strand, within GFF6547at 45.619 kb on + strand, within GFF6547at 45.620 kb on - strand, within GFF6547at 45.697 kb on + strand, within GFF6547at 45.697 kb on + strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.698 kb on - strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 45.751 kb on + strand, within GFF6547at 46.060 kb on + strand, within GFF6548at 46.228 kb on + strand, within GFF6548at 46.229 kb on - strand, within GFF6548at 46.229 kb on - strand, within GFF6548at 46.240 kb on + strand, within GFF6548at 46.240 kb on + strand, within GFF6548at 46.240 kb on + strand, within GFF6548at 46.240 kb on + strand, within GFF6548at 46.240 kb on + strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.241 kb on - strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.348 kb on + strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.349 kb on - strand, within GFF6548at 46.351 kb on + strand, within GFF6548at 46.351 kb on + strand, within GFF6548at 46.351 kb on + strand, within GFF6548at 46.351 kb on + strand, within GFF6548at 46.352 kb on - strand, within GFF6548at 46.352 kb on - strand, within GFF6548at 46.352 kb on - strand, within GFF6548at 46.352 kb on - strand, within GFF6548at 46.352 kb on - strand, within GFF6548at 46.647 kb on + strandat 46.648 kb on - strandat 46.648 kb on - strandat 46.740 kb on + strand, within GFF6549at 46.740 kb on + strand, within GFF6549at 46.740 kb on + strand, within GFF6549at 46.740 kb on + strand, within GFF6549at 46.741 kb on - strand, within GFF6549at 46.741 kb on - strand, within GFF6549at 46.741 kb on - strand, within GFF6549at 46.741 kb on - strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.139 kb on + strand, within GFF6549at 47.140 kb on - strand, within GFF6549at 47.140 kb on - strand, within GFF6549at 47.432 kb on + strandat 47.441 kb on + strandat 47.441 kb on + strandat 47.599 kb on + strandat 47.749 kb on + strand, within GFF6550at 47.749 kb on + strand, within GFF6550at 47.750 kb on - strand, within GFF6550at 47.750 kb on - strand, within GFF6550at 47.769 kb on + strand, within GFF6550at 47.770 kb on - strand, within GFF6550at 47.870 kb on - strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.075 kb on + strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.076 kb on - strand, within GFF6550at 48.370 kb on - strandat 48.370 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
remove
45,619 + GFF6547 0.65 -0.5
45,619 + GFF6547 0.65 -0.1
45,620 - GFF6547 0.65 +0.1
45,697 + GFF6547 0.76 +0.0
45,697 + GFF6547 0.76 +0.3
45,698 - GFF6547 0.76 -1.0
45,698 - GFF6547 0.76 -0.1
45,698 - GFF6547 0.76 +0.4
45,698 - GFF6547 0.76 -0.3
45,698 - GFF6547 0.76 -1.1
45,698 - GFF6547 0.76 -0.5
45,751 + GFF6547 0.83 +1.8
45,751 + GFF6547 0.83 +0.3
45,751 + GFF6547 0.83 -0.5
45,751 + GFF6547 0.83 -0.4
46,060 + GFF6548 0.18 -0.1
46,228 + GFF6548 0.44 -1.4
46,229 - GFF6548 0.44 -1.1
46,229 - GFF6548 0.44 +0.1
46,240 + GFF6548 0.46 -0.4
46,240 + GFF6548 0.46 +0.1
46,240 + GFF6548 0.46 +0.3
46,240 + GFF6548 0.46 +0.1
46,240 + GFF6548 0.46 -0.8
46,241 - GFF6548 0.46 +0.4
46,241 - GFF6548 0.46 -0.3
46,241 - GFF6548 0.46 -1.1
46,241 - GFF6548 0.46 +0.3
46,241 - GFF6548 0.46 +0.3
46,241 - GFF6548 0.46 +1.1
46,348 + GFF6548 0.62 -0.1
46,348 + GFF6548 0.62 +1.1
46,348 + GFF6548 0.62 -0.9
46,348 + GFF6548 0.62 -0.3
46,348 + GFF6548 0.62 -0.1
46,348 + GFF6548 0.62 +0.1
46,348 + GFF6548 0.62 -1.2
46,349 - GFF6548 0.63 -1.1
46,349 - GFF6548 0.63 -0.8
46,349 - GFF6548 0.63 +1.1
46,349 - GFF6548 0.63 +0.6
46,349 - GFF6548 0.63 -1.0
46,349 - GFF6548 0.63 -0.0
46,349 - GFF6548 0.63 -0.2
46,349 - GFF6548 0.63 +1.9
46,349 - GFF6548 0.63 -2.0
46,349 - GFF6548 0.63 -0.4
46,349 - GFF6548 0.63 -1.2
46,349 - GFF6548 0.63 +0.1
46,349 - GFF6548 0.63 -0.1
46,351 + GFF6548 0.63 -0.0
46,351 + GFF6548 0.63 -0.4
46,351 + GFF6548 0.63 -0.2
46,351 + GFF6548 0.63 -0.3
46,352 - GFF6548 0.63 +1.2
46,352 - GFF6548 0.63 -0.0
46,352 - GFF6548 0.63 +0.2
46,352 - GFF6548 0.63 +0.1
46,352 - GFF6548 0.63 -0.1
46,647 + -1.1
46,648 - +0.9
46,648 - +2.1
46,740 + GFF6549 0.16 -0.4
46,740 + GFF6549 0.16 -0.2
46,740 + GFF6549 0.16 -2.6
46,740 + GFF6549 0.16 +0.0
46,741 - GFF6549 0.16 +0.5
46,741 - GFF6549 0.16 -0.0
46,741 - GFF6549 0.16 -0.5
46,741 - GFF6549 0.16 -0.9
47,139 + GFF6549 0.67 -0.5
47,139 + GFF6549 0.67 +0.5
47,139 + GFF6549 0.67 -0.6
47,139 + GFF6549 0.67 -0.2
47,139 + GFF6549 0.67 -0.1
47,139 + GFF6549 0.67 -0.9
47,140 - GFF6549 0.67 -0.4
47,140 - GFF6549 0.67 -0.5
47,432 + +0.1
47,441 + -0.8
47,441 + +0.2
47,599 + -0.1
47,749 + GFF6550 0.24 -0.4
47,749 + GFF6550 0.24 -1.3
47,750 - GFF6550 0.24 +2.3
47,750 - GFF6550 0.24 +0.7
47,769 + GFF6550 0.26 +0.2
47,770 - GFF6550 0.26 +1.1
47,870 - GFF6550 0.38 -0.0
48,075 + GFF6550 0.64 +0.5
48,075 + GFF6550 0.64 +0.9
48,075 + GFF6550 0.64 -1.3
48,075 + GFF6550 0.64 +0.2
48,075 + GFF6550 0.64 +0.8
48,075 + GFF6550 0.64 -0.2
48,075 + GFF6550 0.64 -1.0
48,075 + GFF6550 0.64 +0.1
48,075 + GFF6550 0.64 -2.6
48,075 + GFF6550 0.64 -0.3
48,076 - GFF6550 0.64 +0.6
48,076 - GFF6550 0.64 +1.2
48,076 - GFF6550 0.64 +1.1
48,076 - GFF6550 0.64 +0.5
48,076 - GFF6550 0.64 -0.2
48,076 - GFF6550 0.64 +0.5
48,076 - GFF6550 0.64 -1.5
48,370 - -0.4
48,370 - -2.2

Or see this region's nucleotide sequence