Strain Fitness in Variovorax sp. SCN45 around GFF6535

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
30,547	+		GFF6533	0.86	-0.3
30,547	+		GFF6533	0.86	+0.3
30,547	+		GFF6533	0.86	-0.5
30,547	+		GFF6533	0.86	+0.3
30,548	-		GFF6533	0.86	-0.7
30,548	-		GFF6533	0.86	+1.2
30,548	-		GFF6533	0.86	-0.9
30,548	-		GFF6533	0.86	-0.5
30,679	+				-0.2
30,679	+				-0.2
30,680	-				+0.7
30,680	-				-0.1
30,680	-				+0.1
30,680	-				-0.2
30,680	-				-0.1
30,805	+				-1.2
30,805	+				+2.0
30,805	+				+0.6
30,805	+				+0.9
30,805	+				-1.3
30,805	+				-0.3
30,805	+				+0.5
30,805	+				+1.5
30,805	+				-1.0
30,806	-				-0.4
30,806	-				+0.3
30,806	-				+0.2
30,806	-				-0.2
30,806	-				+1.0
31,090	+		GFF6534	0.62	-0.3
31,090	+		GFF6534	0.62	-0.6
31,090	+		GFF6534	0.62	+0.2
31,090	+		GFF6534	0.62	-0.5
31,091	-		GFF6534	0.62	-0.3
31,091	-		GFF6534	0.62	-0.5
31,277	-				-0.7
31,277	-				+0.3
31,870	+		GFF6535	0.57	+1.0
31,871	-		GFF6535	0.58	-0.2
32,062	+		GFF6535	0.78	+0.1
32,062	+		GFF6535	0.78	-1.8
32,062	+		GFF6535	0.78	-0.6
32,062	+		GFF6535	0.78	-0.8
32,062	+		GFF6535	0.78	+0.2
32,062	+		GFF6535	0.78	-0.8
32,063	-		GFF6535	0.78	-0.9
32,063	-		GFF6535	0.78	+0.3
32,063	-		GFF6535	0.78	+0.7
32,063	-		GFF6535	0.78	-0.3
32,063	-		GFF6535	0.78	-1.3
32,442	+		GFF6536	0.23	+0.0
32,442	+		GFF6536	0.23	-0.2
32,442	+		GFF6536	0.23	+1.0
32,443	-		GFF6536	0.23	+0.8
32,443	-		GFF6536	0.23	-1.3
32,443	-		GFF6536	0.23	-0.1
32,443	-		GFF6536	0.23	-0.0
32,443	-		GFF6536	0.23	-0.1
32,443	-		GFF6536	0.23	-0.9
32,443	-		GFF6536	0.23	-0.1
32,448	+		GFF6536	0.24	+0.8
32,448	+		GFF6536	0.24	-0.5
32,448	+		GFF6536	0.24	-0.1
32,449	-		GFF6536	0.24	-0.5
32,449	-		GFF6536	0.24	+0.2
32,449	-		GFF6536	0.24	-0.0
32,449	-		GFF6536	0.24	-0.3
32,449	-		GFF6536	0.24	+0.2
32,449	-		GFF6536	0.24	-0.5
32,449	-		GFF6536	0.24	-0.3
32,451	+		GFF6536	0.24	+0.4
32,535	+		GFF6536	0.37	-0.0
32,535	+		GFF6536	0.37	-0.3
32,535	+		GFF6536	0.37	+1.5
32,535	+		GFF6536	0.37	+0.4
32,535	+		GFF6536	0.37	+0.0
32,535	+		GFF6536	0.37	+0.3
32,536	-		GFF6536	0.37	-1.0
32,536	-		GFF6536	0.37	+0.0
32,536	-		GFF6536	0.37	+1.0
32,536	-		GFF6536	0.37	-0.5
32,538	+		GFF6536	0.37	-0.3
32,539	-		GFF6536	0.38	+2.0
32,563	-		GFF6536	0.41	-0.2
32,729	-		GFF6536	0.66	+0.8
32,904	+				-0.1
32,904	+				-1.3
32,904	+				-1.0
32,961	+				-0.1
32,961	+				-0.1
32,962	-				-0.3
33,023	+				+0.1
33,024	-				+0.8
33,050	+				+0.5
33,050	+				+0.1
33,050	+				-0.1
33,050	+				-0.3
33,050	+				-0.2
33,050	+				-1.8
33,050	+				-0.3
33,051	-				-0.9
33,051	-				-0.3
33,051	-				-0.5
33,051	-				+0.1
33,051	-				+0.1
33,069	-				-1.0
33,072	-				-0.5
33,157	+				+1.1
33,158	-				+0.1
33,158	-				-1.5