Strain Fitness in Variovorax sp. SCN45 around GFF6474

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6472 and GFF6473 are separated by 102 nucleotidesGFF6473 and GFF6474 are separated by 6 nucleotidesGFF6474 and GFF6475 are separated by 164 nucleotides GFF6472 - membrane efflux protein, at 48,863 to 50,056 GFF6472 GFF6473 - hypothetical protein, at 50,159 to 50,647 GFF6473 GFF6474 - hypothetical protein, at 50,654 to 51,073 GFF6474 GFF6475 - hypothetical protein, at 51,238 to 51,783 GFF6475 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.697 kb on + strand, within GFF6472at 49.697 kb on + strand, within GFF6472at 49.698 kb on - strand, within GFF6472at 49.829 kb on + strand, within GFF6472at 49.829 kb on + strand, within GFF6472at 49.830 kb on - strand, within GFF6472at 49.830 kb on - strand, within GFF6472at 49.830 kb on - strand, within GFF6472at 49.830 kb on - strand, within GFF6472at 49.830 kb on - strand, within GFF6472at 50.133 kb on - strandat 50.378 kb on + strand, within GFF6473at 50.378 kb on + strand, within GFF6473at 50.379 kb on - strand, within GFF6473at 50.549 kb on + strand, within GFF6473at 50.549 kb on + strand, within GFF6473at 50.549 kb on + strand, within GFF6473at 50.550 kb on - strand, within GFF6473at 50.550 kb on - strand, within GFF6473at 50.550 kb on - strand, within GFF6473at 50.550 kb on - strand, within GFF6473at 50.836 kb on - strand, within GFF6474at 50.883 kb on + strand, within GFF6474at 50.883 kb on + strand, within GFF6474at 50.883 kb on + strand, within GFF6474at 50.883 kb on + strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.884 kb on - strand, within GFF6474at 50.925 kb on + strand, within GFF6474at 50.925 kb on + strand, within GFF6474at 50.925 kb on + strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.926 kb on - strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.928 kb on + strand, within GFF6474at 50.929 kb on - strand, within GFF6474at 50.929 kb on - strand, within GFF6474at 50.929 kb on - strand, within GFF6474at 51.102 kb on + strandat 51.102 kb on + strandat 51.102 kb on + strandat 51.102 kb on + strandat 51.103 kb on - strandat 51.103 kb on - strandat 51.103 kb on - strandat 51.103 kb on - strandat 51.162 kb on - strandat 51.421 kb on + strand, within GFF6475at 51.422 kb on - strand, within GFF6475at 51.565 kb on + strand, within GFF6475at 51.829 kb on + strandat 51.829 kb on + strandat 51.829 kb on + strandat 51.829 kb on + strandat 51.829 kb on + strandat 51.829 kb on + strandat 51.829 kb on + strandat 51.830 kb on - strandat 51.830 kb on - strandat 51.830 kb on - strandat 52.022 kb on + strandat 52.023 kb on - strandat 52.023 kb on - strandat 52.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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49,697 + GFF6472 0.70 +0.5
49,697 + GFF6472 0.70 -1.3
49,698 - GFF6472 0.70 -1.7
49,829 + GFF6472 0.81 -0.3
49,829 + GFF6472 0.81 -0.2
49,830 - GFF6472 0.81 +1.1
49,830 - GFF6472 0.81 -0.3
49,830 - GFF6472 0.81 +0.8
49,830 - GFF6472 0.81 +0.1
49,830 - GFF6472 0.81 -1.8
50,133 - -0.0
50,378 + GFF6473 0.45 -0.1
50,378 + GFF6473 0.45 -0.4
50,379 - GFF6473 0.45 +0.4
50,549 + GFF6473 0.80 -0.1
50,549 + GFF6473 0.80 -0.2
50,549 + GFF6473 0.80 -0.1
50,550 - GFF6473 0.80 -1.8
50,550 - GFF6473 0.80 -1.8
50,550 - GFF6473 0.80 -0.4
50,550 - GFF6473 0.80 -0.6
50,836 - GFF6474 0.43 -0.8
50,883 + GFF6474 0.55 +0.0
50,883 + GFF6474 0.55 -0.8
50,883 + GFF6474 0.55 -1.3
50,883 + GFF6474 0.55 -0.4
50,884 - GFF6474 0.55 +0.3
50,884 - GFF6474 0.55 +0.5
50,884 - GFF6474 0.55 -1.4
50,884 - GFF6474 0.55 +0.0
50,884 - GFF6474 0.55 +0.3
50,884 - GFF6474 0.55 -0.6
50,884 - GFF6474 0.55 -1.5
50,925 + GFF6474 0.65 -0.9
50,925 + GFF6474 0.65 -0.7
50,925 + GFF6474 0.65 -1.1
50,926 - GFF6474 0.65 -1.0
50,926 - GFF6474 0.65 +0.3
50,926 - GFF6474 0.65 -0.2
50,926 - GFF6474 0.65 -0.4
50,926 - GFF6474 0.65 -0.0
50,926 - GFF6474 0.65 -0.9
50,928 + GFF6474 0.65 -0.0
50,928 + GFF6474 0.65 +0.9
50,928 + GFF6474 0.65 -0.2
50,928 + GFF6474 0.65 -0.5
50,928 + GFF6474 0.65 -0.6
50,928 + GFF6474 0.65 -0.4
50,929 - GFF6474 0.65 -0.5
50,929 - GFF6474 0.65 -0.5
50,929 - GFF6474 0.65 -2.0
51,102 + -0.3
51,102 + -1.0
51,102 + +1.5
51,102 + -0.2
51,103 - +0.4
51,103 - -0.5
51,103 - -0.4
51,103 - -0.2
51,162 - -0.4
51,421 + GFF6475 0.34 -0.4
51,422 - GFF6475 0.34 -0.7
51,565 + GFF6475 0.60 -0.8
51,829 + +0.0
51,829 + -0.0
51,829 + +0.2
51,829 + +1.2
51,829 + -0.8
51,829 + -0.9
51,829 + +0.3
51,830 - +0.4
51,830 - +2.0
51,830 - -0.6
52,022 + +0.3
52,023 - +0.5
52,023 - +0.8
52,023 - -1.2

Or see this region's nucleotide sequence