Strain Fitness in Variovorax sp. SCN45 around GFF6355

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
20,039	+		GFF6354	0.44	-0.1
20,214	-		GFF6354	0.57	-1.7
20,214	-		GFF6354	0.57	-0.0
20,214	-		GFF6354	0.57	-0.8
20,617	+		GFF6354	0.86	+0.5
20,643	-		GFF6354	0.88	+1.1
20,678	+				+0.6
20,678	+				-0.5
20,678	+				+0.4
20,690	+				+0.3
20,691	-				+0.1
20,726	+				-1.0
20,726	+				-0.7
20,727	-				-1.8
20,727	-				-1.8
20,727	-				-0.6
20,902	-				+0.1
20,915	+				-1.3
20,942	+				-0.5
20,943	-				-0.0
20,959	+				-1.0
20,959	+				+0.3
20,962	+				+0.6
20,980	-				-0.4
20,990	+				+0.3
20,991	-				-0.6
21,064	-		GFF6355	0.17	-1.4
21,276	+		GFF6355	0.58	-0.4
21,521	+				-1.4
21,521	+				-0.1
21,523	+				-0.4
21,523	+				-0.1
21,612	-				+0.0
21,771	-		GFF6356	0.36	+0.5
22,379	-		GFF6357	0.15	-0.2
22,386	+		GFF6357	0.15	-0.6
22,386	+		GFF6357	0.15	-0.1