Strain Fitness in Variovorax sp. SCN45 around GFF6333

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6332 and GFF6333 are separated by 5 nucleotides GFF6332 - Maltodextrin glucosidase (EC 3.2.1.20), at 126,746 to 128,434 GFF6332 GFF6333 - 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18), at 128,440 to 130,614 GFF6333 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 127.469 kb on + strand, within GFF6332at 127.469 kb on + strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.470 kb on - strand, within GFF6332at 127.491 kb on - strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.613 kb on + strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.614 kb on - strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.646 kb on + strand, within GFF6332at 127.647 kb on - strand, within GFF6332at 127.647 kb on - strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.874 kb on + strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.875 kb on - strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 127.937 kb on + strand, within GFF6332at 128.054 kb on + strand, within GFF6332at 128.054 kb on + strand, within GFF6332at 128.055 kb on - strand, within GFF6332at 128.055 kb on - strand, within GFF6332at 128.387 kb on + strandat 128.686 kb on + strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 128.687 kb on - strand, within GFF6333at 129.004 kb on + strand, within GFF6333at 129.004 kb on + strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.005 kb on - strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.178 kb on + strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.179 kb on - strand, within GFF6333at 129.236 kb on - strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.265 kb on + strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.266 kb on - strand, within GFF6333at 129.340 kb on + strand, within GFF6333at 129.512 kb on - strand, within GFF6333at 129.512 kb on - strand, within GFF6333at 129.512 kb on - strand, within GFF6333at 129.517 kb on + strand, within GFF6333at 129.517 kb on + strand, within GFF6333at 129.518 kb on - strand, within GFF6333at 129.571 kb on + strand, within GFF6333at 129.571 kb on + strand, within GFF6333at 129.572 kb on - strand, within GFF6333at 129.572 kb on - strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.595 kb on + strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.596 kb on - strand, within GFF6333at 129.616 kb on + strand, within GFF6333at 129.616 kb on + strand, within GFF6333at 129.616 kb on + strand, within GFF6333at 129.617 kb on - strand, within GFF6333at 129.617 kb on - strand, within GFF6333at 129.676 kb on + strand, within GFF6333at 129.685 kb on + strand, within GFF6333at 129.866 kb on + strand, within GFF6333at 129.867 kb on - strand, within GFF6333at 129.867 kb on - strand, within GFF6333at 129.867 kb on - strand, within GFF6333at 129.867 kb on - strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.877 kb on + strand, within GFF6333at 129.878 kb on - strand, within GFF6333at 129.878 kb on - strand, within GFF6333at 129.878 kb on - strand, within GFF6333at 129.878 kb on - strand, within GFF6333at 129.878 kb on - strand, within GFF6333at 129.916 kb on + strand, within GFF6333at 129.916 kb on + strand, within GFF6333at 129.916 kb on + strand, within GFF6333at 129.916 kb on + strand, within GFF6333at 129.916 kb on + strand, within GFF6333at 129.917 kb on - strand, within GFF6333at 129.917 kb on - strand, within GFF6333at 129.917 kb on - strand, within GFF6333at 129.938 kb on - strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.979 kb on + strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 129.980 kb on - strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.102 kb on + strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.103 kb on - strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.108 kb on + strand, within GFF6333at 130.109 kb on - strand, within GFF6333at 130.109 kb on - strand, within GFF6333at 130.109 kb on - strand, within GFF6333at 130.109 kb on - strand, within GFF6333at 130.120 kb on + strand, within GFF6333at 130.165 kb on + strand, within GFF6333at 130.165 kb on + strand, within GFF6333at 130.165 kb on + strand, within GFF6333at 130.166 kb on - strand, within GFF6333at 130.476 kb on + strandat 130.476 kb on + strandat 130.477 kb on - strandat 130.477 kb on - strandat 130.477 kb on - strandat 130.590 kb on + strandat 130.591 kb on - strandat 130.591 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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127,469 + GFF6332 0.43 -0.3
127,469 + GFF6332 0.43 -0.7
127,470 - GFF6332 0.43 +0.2
127,470 - GFF6332 0.43 -0.2
127,470 - GFF6332 0.43 -0.8
127,491 - GFF6332 0.44 -0.4
127,613 + GFF6332 0.51 -0.2
127,613 + GFF6332 0.51 -0.0
127,613 + GFF6332 0.51 -0.4
127,613 + GFF6332 0.51 -0.0
127,614 - GFF6332 0.51 +0.6
127,614 - GFF6332 0.51 -0.1
127,614 - GFF6332 0.51 -0.6
127,614 - GFF6332 0.51 -0.4
127,646 + GFF6332 0.53 -0.7
127,646 + GFF6332 0.53 -1.0
127,646 + GFF6332 0.53 -1.3
127,646 + GFF6332 0.53 +0.6
127,646 + GFF6332 0.53 -0.3
127,646 + GFF6332 0.53 -0.7
127,647 - GFF6332 0.53 -0.0
127,647 - GFF6332 0.53 -0.1
127,874 + GFF6332 0.67 +0.8
127,874 + GFF6332 0.67 +1.5
127,874 + GFF6332 0.67 +1.6
127,874 + GFF6332 0.67 -0.3
127,874 + GFF6332 0.67 -2.0
127,875 - GFF6332 0.67 +0.1
127,875 - GFF6332 0.67 -0.1
127,875 - GFF6332 0.67 -0.6
127,875 - GFF6332 0.67 -0.9
127,875 - GFF6332 0.67 -0.6
127,875 - GFF6332 0.67 +0.5
127,937 + GFF6332 0.71 +0.6
127,937 + GFF6332 0.71 -1.4
127,937 + GFF6332 0.71 -0.5
128,054 + GFF6332 0.77 -0.4
128,054 + GFF6332 0.77 -1.5
128,055 - GFF6332 0.78 +0.3
128,055 - GFF6332 0.78 -0.5
128,387 + +0.9
128,686 + GFF6333 0.11 -1.6
128,687 - GFF6333 0.11 -1.5
128,687 - GFF6333 0.11 +0.0
128,687 - GFF6333 0.11 -1.4
129,004 + GFF6333 0.26 -1.5
129,004 + GFF6333 0.26 -0.4
129,005 - GFF6333 0.26 +0.1
129,005 - GFF6333 0.26 -0.0
129,005 - GFF6333 0.26 -0.5
129,005 - GFF6333 0.26 -0.4
129,178 + GFF6333 0.34 -1.1
129,178 + GFF6333 0.34 +0.1
129,178 + GFF6333 0.34 -0.5
129,178 + GFF6333 0.34 +0.1
129,178 + GFF6333 0.34 -1.0
129,178 + GFF6333 0.34 -0.2
129,178 + GFF6333 0.34 +0.1
129,179 - GFF6333 0.34 -0.0
129,179 - GFF6333 0.34 -1.7
129,179 - GFF6333 0.34 -0.2
129,179 - GFF6333 0.34 -1.8
129,179 - GFF6333 0.34 +0.2
129,236 - GFF6333 0.37 +0.3
129,265 + GFF6333 0.38 +0.2
129,265 + GFF6333 0.38 -0.5
129,265 + GFF6333 0.38 -0.5
129,265 + GFF6333 0.38 -0.2
129,266 - GFF6333 0.38 -0.4
129,266 - GFF6333 0.38 -1.5
129,266 - GFF6333 0.38 -1.0
129,340 + GFF6333 0.41 -1.1
129,512 - GFF6333 0.49 +1.4
129,512 - GFF6333 0.49 -0.4
129,512 - GFF6333 0.49 -1.4
129,517 + GFF6333 0.50 +0.2
129,517 + GFF6333 0.50 -0.7
129,518 - GFF6333 0.50 +1.4
129,571 + GFF6333 0.52 -0.2
129,571 + GFF6333 0.52 -1.0
129,572 - GFF6333 0.52 -0.3
129,572 - GFF6333 0.52 -1.3
129,595 + GFF6333 0.53 -0.8
129,595 + GFF6333 0.53 -1.0
129,595 + GFF6333 0.53 +0.4
129,595 + GFF6333 0.53 -0.8
129,595 + GFF6333 0.53 -0.0
129,595 + GFF6333 0.53 -1.6
129,595 + GFF6333 0.53 -0.3
129,596 - GFF6333 0.53 -0.9
129,596 - GFF6333 0.53 -0.1
129,596 - GFF6333 0.53 -0.5
129,596 - GFF6333 0.53 -1.5
129,596 - GFF6333 0.53 -1.0
129,596 - GFF6333 0.53 +0.2
129,616 + GFF6333 0.54 -1.1
129,616 + GFF6333 0.54 -0.1
129,616 + GFF6333 0.54 +0.0
129,617 - GFF6333 0.54 -0.7
129,617 - GFF6333 0.54 -0.7
129,676 + GFF6333 0.57 -0.2
129,685 + GFF6333 0.57 +0.0
129,866 + GFF6333 0.66 +1.0
129,867 - GFF6333 0.66 +0.8
129,867 - GFF6333 0.66 -1.8
129,867 - GFF6333 0.66 -0.2
129,867 - GFF6333 0.66 +1.5
129,877 + GFF6333 0.66 -0.3
129,877 + GFF6333 0.66 +0.9
129,877 + GFF6333 0.66 -0.2
129,877 + GFF6333 0.66 -0.0
129,877 + GFF6333 0.66 -0.2
129,877 + GFF6333 0.66 -1.1
129,877 + GFF6333 0.66 -1.0
129,877 + GFF6333 0.66 -0.0
129,877 + GFF6333 0.66 -1.5
129,877 + GFF6333 0.66 -0.3
129,877 + GFF6333 0.66 -0.2
129,877 + GFF6333 0.66 -0.5
129,878 - GFF6333 0.66 -1.0
129,878 - GFF6333 0.66 -0.6
129,878 - GFF6333 0.66 +0.9
129,878 - GFF6333 0.66 -1.2
129,878 - GFF6333 0.66 -1.1
129,916 + GFF6333 0.68 -0.8
129,916 + GFF6333 0.68 -1.1
129,916 + GFF6333 0.68 -0.8
129,916 + GFF6333 0.68 +0.3
129,916 + GFF6333 0.68 -0.4
129,917 - GFF6333 0.68 +0.3
129,917 - GFF6333 0.68 +1.6
129,917 - GFF6333 0.68 -0.3
129,938 - GFF6333 0.69 -2.0
129,979 + GFF6333 0.71 -0.5
129,979 + GFF6333 0.71 -0.7
129,979 + GFF6333 0.71 -0.4
129,979 + GFF6333 0.71 -1.9
129,979 + GFF6333 0.71 -1.2
129,979 + GFF6333 0.71 -1.1
129,979 + GFF6333 0.71 +0.8
129,979 + GFF6333 0.71 -0.7
129,979 + GFF6333 0.71 -0.7
129,979 + GFF6333 0.71 -1.2
129,980 - GFF6333 0.71 -0.5
129,980 - GFF6333 0.71 -0.3
129,980 - GFF6333 0.71 +0.8
129,980 - GFF6333 0.71 -0.8
129,980 - GFF6333 0.71 -0.5
129,980 - GFF6333 0.71 -1.0
129,980 - GFF6333 0.71 -0.7
130,102 + GFF6333 0.76 +0.1
130,102 + GFF6333 0.76 -0.3
130,102 + GFF6333 0.76 -0.8
130,102 + GFF6333 0.76 +0.5
130,102 + GFF6333 0.76 -0.3
130,102 + GFF6333 0.76 +0.2
130,102 + GFF6333 0.76 -1.4
130,102 + GFF6333 0.76 +0.2
130,102 + GFF6333 0.76 -1.8
130,102 + GFF6333 0.76 -1.8
130,102 + GFF6333 0.76 +0.8
130,102 + GFF6333 0.76 -0.4
130,102 + GFF6333 0.76 -0.8
130,103 - GFF6333 0.76 +0.5
130,103 - GFF6333 0.76 -0.1
130,103 - GFF6333 0.76 -2.1
130,103 - GFF6333 0.76 +0.2
130,103 - GFF6333 0.76 +0.5
130,103 - GFF6333 0.76 -0.7
130,103 - GFF6333 0.76 -0.3
130,103 - GFF6333 0.76 +0.3
130,103 - GFF6333 0.76 -0.4
130,103 - GFF6333 0.76 -0.5
130,103 - GFF6333 0.76 +0.7
130,103 - GFF6333 0.76 -0.8
130,103 - GFF6333 0.76 -1.7
130,103 - GFF6333 0.76 -1.2
130,103 - GFF6333 0.76 -0.6
130,108 + GFF6333 0.77 -0.3
130,108 + GFF6333 0.77 -0.2
130,108 + GFF6333 0.77 -1.2
130,108 + GFF6333 0.77 +0.2
130,108 + GFF6333 0.77 -0.2
130,108 + GFF6333 0.77 +2.5
130,108 + GFF6333 0.77 +0.2
130,109 - GFF6333 0.77 -1.7
130,109 - GFF6333 0.77 -0.8
130,109 - GFF6333 0.77 -1.8
130,109 - GFF6333 0.77 +0.2
130,120 + GFF6333 0.77 +0.0
130,165 + GFF6333 0.79 -0.8
130,165 + GFF6333 0.79 +1.6
130,165 + GFF6333 0.79 -0.4
130,166 - GFF6333 0.79 -1.1
130,476 + -0.8
130,476 + +0.3
130,477 - +1.0
130,477 - +0.1
130,477 - -0.5
130,590 + -1.5
130,591 - +0.8
130,591 - +1.3

Or see this region's nucleotide sequence