Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6260 and GFF6261 overlap by 4 nucleotides GFF6261 and GFF6262 are separated by 77 nucleotides GFF6262 and GFF6263 overlap by 8 nucleotides GFF6263 and GFF6264 overlap by 4 nucleotides
GFF6260 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH (EC 2.7.8.37), at 53,448 to 54,077
GFF6260
GFF6261 - Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG (EC 2.7.8.37), at 54,074 to 54,577
GFF6261
GFF6262 - Transcriptional regulator PhnF, at 54,655 to 55,410
GFF6262
GFF6263 - Uncharacterized protein Atu0170, clustered with phosphonate utilization, at 55,403 to 56,137
GFF6263
GFF6264 - Ribose 1,5-bisphosphate phosphokinase PhnN (EC 2.7.4.23), at 56,134 to 56,727
GFF6264
Position (kb) 54
55
56 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.303 kb on + strand, within GFF6261 at 54.303 kb on + strand, within GFF6261 at 54.304 kb on - strand, within GFF6261 at 54.304 kb on - strand, within GFF6261 at 54.586 kb on + strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.587 kb on - strand at 54.603 kb on - strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.632 kb on + strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.633 kb on - strand at 54.636 kb on + strand at 54.636 kb on + strand at 54.637 kb on - strand at 54.637 kb on - strand at 54.763 kb on + strand, within GFF6262 at 54.763 kb on + strand, within GFF6262 at 54.764 kb on - strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.898 kb on + strand, within GFF6262 at 54.899 kb on - strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.216 kb on + strand, within GFF6262 at 55.352 kb on - strand at 55.917 kb on - strand, within GFF6263 at 56.152 kb on + strand at 56.152 kb on + strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.153 kb on - strand at 56.368 kb on + strand, within GFF6264 at 56.369 kb on - strand, within GFF6264
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 54,303 + GFF6261 0.45 +0.0 54,303 + GFF6261 0.45 +0.7 54,304 - GFF6261 0.46 +0.0 54,304 - GFF6261 0.46 -1.5 54,586 + -0.4 54,587 - +0.8 54,587 - -0.5 54,587 - +0.0 54,603 - +0.4 54,632 + +0.4 54,632 + -0.2 54,632 + -0.5 54,632 + -0.1 54,632 + +1.8 54,633 - -0.2 54,633 - -0.2 54,633 - -0.5 54,633 - -0.3 54,633 - -0.0 54,633 - -0.4 54,633 - -0.3 54,636 + -0.2 54,636 + +0.2 54,637 - -0.1 54,637 - -0.6 54,763 + GFF6262 0.14 -0.4 54,763 + GFF6262 0.14 -0.5 54,764 - GFF6262 0.14 -1.5 54,898 + GFF6262 0.32 -0.4 54,898 + GFF6262 0.32 +0.8 54,898 + GFF6262 0.32 -1.0 54,898 + GFF6262 0.32 -0.7 54,898 + GFF6262 0.32 +0.7 54,899 - GFF6262 0.32 +0.3 55,216 + GFF6262 0.74 -0.1 55,216 + GFF6262 0.74 -2.7 55,216 + GFF6262 0.74 +0.2 55,216 + GFF6262 0.74 -1.8 55,352 - +1.0 55,917 - GFF6263 0.70 -0.3 56,152 + -0.2 56,152 + -0.2 56,153 - +0.6 56,153 - -1.8 56,153 - -0.5 56,368 + GFF6264 0.39 -0.5 56,369 - GFF6264 0.40 -0.5
Or see this region's nucleotide sequence