Strain Fitness in Variovorax sp. SCN45 around GFF6078

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
139,860	+		GFF6076	0.82	-1.8
139,860	+		GFF6076	0.82	-1.5
139,860	+		GFF6076	0.82	-0.8
139,860	+		GFF6076	0.82	-0.1
139,861	-		GFF6076	0.82	-1.0
139,861	-		GFF6076	0.82	-0.8
139,861	-		GFF6076	0.82	+0.1
139,933	-				+0.0
140,008	+				+0.0
140,009	-				+0.2
140,009	-				-0.0
140,099	+		GFF6077	0.19	+0.7
140,100	-		GFF6077	0.19	-1.0
140,100	-		GFF6077	0.19	+0.7
140,261	+		GFF6077	0.49	-0.5
140,261	+		GFF6077	0.49	+0.8
140,261	+		GFF6077	0.49	+0.6
140,261	+		GFF6077	0.49	-0.4
140,261	+		GFF6077	0.49	-1.8
140,261	+		GFF6077	0.49	+0.3
140,261	+		GFF6077	0.49	+0.7
140,261	+		GFF6077	0.49	+0.4
140,262	-		GFF6077	0.49	-0.9
140,262	-		GFF6077	0.49	-0.8
140,262	-		GFF6077	0.49	-1.8
140,262	-		GFF6077	0.49	+1.6
140,262	-		GFF6077	0.49	-1.2
140,262	-		GFF6077	0.49	+0.5
140,262	-		GFF6077	0.49	-0.6
140,262	-		GFF6077	0.49	-0.5
140,262	-		GFF6077	0.49	-0.2
140,262	-		GFF6077	0.49	+0.7
140,262	-		GFF6077	0.49	+0.5
140,262	-		GFF6077	0.49	-0.5
140,315	+		GFF6077	0.59	+1.2
140,315	+		GFF6077	0.59	-1.3
140,315	+		GFF6077	0.59	-0.4
140,316	-		GFF6077	0.59	+0.1
140,316	-		GFF6077	0.59	-0.7
140,316	-		GFF6077	0.59	-0.2
140,316	-		GFF6077	0.59	-0.7
140,396	+		GFF6077	0.74	-0.3
140,396	+		GFF6077	0.74	+0.3
140,396	+		GFF6077	0.74	-2.0
140,396	+		GFF6077	0.74	-1.7
140,396	+		GFF6077	0.74	-0.6
140,396	+		GFF6077	0.74	-0.5
140,396	+		GFF6077	0.74	-0.1
140,396	+		GFF6077	0.74	+1.4
140,396	+		GFF6077	0.74	-0.7
140,397	-		GFF6077	0.75	-0.1
140,397	-		GFF6077	0.75	+0.2
140,397	-		GFF6077	0.75	-0.1
140,397	-		GFF6077	0.75	+0.2
140,397	-		GFF6077	0.75	-1.2
140,399	+		GFF6077	0.75	-1.3
140,399	+		GFF6077	0.75	-0.4
140,399	+		GFF6077	0.75	+0.4
140,399	+		GFF6077	0.75	-0.4
140,399	+		GFF6077	0.75	-1.7
140,399	+		GFF6077	0.75	+0.7
140,399	+		GFF6077	0.75	-1.9
140,399	+		GFF6077	0.75	+0.2
140,399	+		GFF6077	0.75	-0.4
140,400	-		GFF6077	0.75	+0.1
140,400	-		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	-0.3
140,400	-		GFF6077	0.75	+0.4
140,400	-		GFF6077	0.75	-0.3
140,400	-		GFF6077	0.75	+0.0
140,400	-		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	-0.7
140,400	-		GFF6077	0.75	-0.3
140,400	-		GFF6077	0.75	-0.2
140,400	-		GFF6077	0.75	+0.0
140,400	-		GFF6077	0.75	-0.4
140,449	+		GFF6077	0.84	-0.4
140,450	-		GFF6077	0.84	+0.9
140,450	-		GFF6077	0.84	+0.1
140,450	-		GFF6077	0.84	-0.7
140,585	+				+0.0
140,585	+				+0.9
140,585	+				-0.8
140,585	+				-0.3
140,585	+				-1.6
140,586	-				+0.0
140,586	-				-0.2
140,586	-				-0.2
140,586	-				+0.1
140,586	-				-0.3
140,586	-				-0.9
140,675	+		GFF6078	0.13	-1.2
140,718	-		GFF6078	0.18	+0.3
140,768	+		GFF6078	0.24	-1.0
140,768	+		GFF6078	0.24	+0.0
140,768	+		GFF6078	0.24	+0.5
140,768	+		GFF6078	0.24	+0.1
140,768	+		GFF6078	0.24	-0.4
140,768	+		GFF6078	0.24	+0.5
140,768	+		GFF6078	0.24	-1.0
140,768	+		GFF6078	0.24	+0.5
140,768	+		GFF6078	0.24	-0.0
140,769	-		GFF6078	0.24	+0.4
140,769	-		GFF6078	0.24	-0.3
140,769	-		GFF6078	0.24	-0.1
140,769	-		GFF6078	0.24	+0.0
140,769	-		GFF6078	0.24	+0.2
140,769	-		GFF6078	0.24	+0.3
140,808	+		GFF6078	0.29	+0.3
140,867	+		GFF6078	0.36	-0.7
141,048	-		GFF6078	0.58	-0.1
141,057	-		GFF6078	0.59	-0.7
141,062	+		GFF6078	0.60	-0.8
141,062	+		GFF6078	0.60	-0.0
141,062	+		GFF6078	0.60	-0.2
141,062	+		GFF6078	0.60	+1.1
141,062	+		GFF6078	0.60	-0.3
141,062	+		GFF6078	0.60	-0.6
141,063	-		GFF6078	0.60	-0.6
141,063	-		GFF6078	0.60	-0.4
141,063	-		GFF6078	0.60	-0.2
141,063	-		GFF6078	0.60	+1.6
141,063	-		GFF6078	0.60	+0.7
141,063	-		GFF6078	0.60	+0.2
141,063	-		GFF6078	0.60	+0.2
141,063	-		GFF6078	0.60	-0.9
141,063	-		GFF6078	0.60	+1.1
141,063	-		GFF6078	0.60	-0.2
141,155	+		GFF6078	0.71	-0.7
141,155	+		GFF6078	0.71	+0.4
141,156	-		GFF6078	0.71	-0.5
141,275	+		GFF6078	0.86	+0.8
141,275	+		GFF6078	0.86	-0.9
141,276	-		GFF6078	0.86	-0.4
141,276	-		GFF6078	0.86	+1.0
141,276	-		GFF6078	0.86	+1.0
141,393	+				-0.3
141,393	+				-0.4
141,394	-				+1.9
141,437	+				-0.3
141,437	+				-1.0
141,437	+				+0.4
141,437	+				+0.5
141,437	+				-0.1
141,437	+				-0.7
141,437	+				+0.2
141,437	+				+0.4
141,437	+				-0.4
141,437	+				+1.6
141,438	-				+0.6
141,438	-				+0.5
141,438	-				-1.5
141,438	-				-0.6
141,438	-				+0.7
141,438	-				-0.0
141,438	-				+2.0
141,438	-				+0.2
141,438	-				-0.2
141,544	+				-0.9
141,544	+				-0.7
141,545	-				-0.3
141,545	-				-0.2
141,545	-				-0.1
141,545	-				-0.8
141,555	-				-1.4
141,558	+				+0.1
141,558	+				+0.1
141,558	+				-0.5
141,558	+				-0.8
141,558	+				-0.4
141,558	+				-0.1
141,558	+				+2.0
141,558	+				-0.1
141,558	+				+1.0
141,558	+				-0.0
141,558	+				-1.7
141,559	-				-0.1
141,559	-				-0.2
141,559	-				-0.2
141,559	-				+0.7
141,559	-				+0.1
141,559	-				+1.6
141,559	-				-2.0
141,559	-				-0.7
141,801	+		GFF6079	0.57	+0.4
141,801	+		GFF6079	0.57	+0.0
141,801	+		GFF6079	0.57	-1.9
141,802	-		GFF6079	0.58	-0.7
141,802	-		GFF6079	0.58	-0.8
141,802	-		GFF6079	0.58	-0.6
141,802	-		GFF6079	0.58	-0.6
141,802	-		GFF6079	0.58	-0.3
142,009	+				-0.7
142,009	+				-1.3
142,035	+				+0.6
142,035	+				+0.1
142,036	-				-0.6
142,047	-				-0.9
142,047	-				-1.8
142,115	+				+1.3
142,115	+				-0.7
142,115	+				+0.2
142,116	-				+0.8
142,159	+				+0.7
142,319	+		GFF6080	0.24	+0.3
142,320	-		GFF6080	0.24	-2.1