Strain Fitness in Variovorax sp. SCN45 around GFF5995

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5994 and GFF5995 are separated by 121 nucleotidesGFF5995 and GFF5996 overlap by 4 nucleotides GFF5994 - Chlorogenate esterase, at 51,270 to 54,026 GFF5994 GFF5995 - LysR family transcriptional regulator STM3121, at 54,148 to 55,083 GFF5995 GFF5996 - BUG/TctC family periplasmic protein, at 55,080 to 56,075 GFF5996 Position (kb) 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 53.152 kb on + strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.153 kb on - strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.155 kb on + strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.201 kb on - strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.236 kb on + strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.237 kb on - strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.260 kb on + strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.261 kb on - strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.302 kb on + strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.303 kb on - strand, within GFF5994at 53.326 kb on + strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.327 kb on - strand, within GFF5994at 53.386 kb on + strand, within GFF5994at 53.387 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.465 kb on - strand, within GFF5994at 53.473 kb on + strand, within GFF5994at 53.474 kb on - strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.668 kb on + strand, within GFF5994at 53.669 kb on - strand, within GFF5994at 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.088 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.104 kb on + strandat 54.105 kb on - strandat 54.115 kb on - strandat 54.119 kb on + strandat 54.119 kb on + strandat 54.120 kb on - strandat 54.145 kb on + strandat 54.145 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.155 kb on + strandat 54.156 kb on - strandat 54.156 kb on - strandat 54.169 kb on + strandat 54.169 kb on + strandat 54.775 kb on + strand, within GFF5995at 54.775 kb on + strand, within GFF5995at 54.776 kb on - strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 54.934 kb on + strand, within GFF5995at 55.086 kb on - strandat 55.212 kb on + strand, within GFF5996at 55.212 kb on + strand, within GFF5996at 55.212 kb on + strand, within GFF5996at 55.213 kb on - strand, within GFF5996at 55.213 kb on - strand, within GFF5996at 55.213 kb on - strand, within GFF5996at 55.213 kb on - strand, within GFF5996at 55.426 kb on - strand, within GFF5996at 55.737 kb on + strand, within GFF5996at 55.737 kb on + strand, within GFF5996at 55.737 kb on + strand, within GFF5996at 55.738 kb on - strand, within GFF5996at 55.968 kb on + strand, within GFF5996at 55.968 kb on + strand, within GFF5996at 55.968 kb on + strand, within GFF5996at 55.968 kb on + strand, within GFF5996at 55.969 kb on - strand, within GFF5996at 55.969 kb on - strand, within GFF5996at 55.969 kb on - strand, within GFF5996

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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53,152 + GFF5994 0.68 -0.2
53,153 - GFF5994 0.68 -0.3
53,153 - GFF5994 0.68 -0.5
53,155 + GFF5994 0.68 -0.3
53,155 + GFF5994 0.68 +0.8
53,201 - GFF5994 0.70 +0.6
53,201 - GFF5994 0.70 +0.2
53,236 + GFF5994 0.71 -0.8
53,236 + GFF5994 0.71 -1.2
53,236 + GFF5994 0.71 +0.3
53,236 + GFF5994 0.71 -0.2
53,236 + GFF5994 0.71 -0.5
53,237 - GFF5994 0.71 +0.0
53,237 - GFF5994 0.71 -0.1
53,260 + GFF5994 0.72 -0.9
53,260 + GFF5994 0.72 -1.0
53,260 + GFF5994 0.72 -0.2
53,260 + GFF5994 0.72 +0.0
53,260 + GFF5994 0.72 -1.0
53,261 - GFF5994 0.72 +0.9
53,261 - GFF5994 0.72 -0.9
53,261 - GFF5994 0.72 -1.1
53,302 + GFF5994 0.74 -0.3
53,302 + GFF5994 0.74 -0.7
53,302 + GFF5994 0.74 +0.0
53,303 - GFF5994 0.74 -0.7
53,303 - GFF5994 0.74 -0.6
53,326 + GFF5994 0.75 -0.4
53,327 - GFF5994 0.75 -1.7
53,327 - GFF5994 0.75 -1.1
53,386 + GFF5994 0.77 -1.0
53,387 - GFF5994 0.77 +0.0
53,465 - GFF5994 0.80 +1.0
53,465 - GFF5994 0.80 -1.0
53,473 + GFF5994 0.80 +0.8
53,474 - GFF5994 0.80 -0.8
53,668 + GFF5994 0.87 +0.3
53,668 + GFF5994 0.87 -1.1
53,669 - GFF5994 0.87 +0.1
54,088 + -0.0
54,088 + -1.0
54,088 + -0.8
54,088 + +0.4
54,104 + +1.3
54,104 + -0.5
54,104 + +0.5
54,105 - -0.8
54,115 - -0.6
54,119 + -0.8
54,119 + -0.8
54,120 - -0.7
54,145 + +0.4
54,145 + +0.7
54,155 + +0.5
54,155 + +0.0
54,155 + -0.0
54,155 + +2.2
54,155 + -1.4
54,156 - +0.0
54,156 - -0.4
54,169 + -1.8
54,169 + -0.4
54,775 + GFF5995 0.67 -0.9
54,775 + GFF5995 0.67 -0.0
54,776 - GFF5995 0.67 -0.1
54,934 + GFF5995 0.84 +0.2
54,934 + GFF5995 0.84 +0.6
54,934 + GFF5995 0.84 +0.2
55,086 - +0.9
55,212 + GFF5996 0.13 -0.5
55,212 + GFF5996 0.13 -1.8
55,212 + GFF5996 0.13 -0.2
55,213 - GFF5996 0.13 +0.1
55,213 - GFF5996 0.13 -0.3
55,213 - GFF5996 0.13 -0.1
55,213 - GFF5996 0.13 -0.2
55,426 - GFF5996 0.35 -0.8
55,737 + GFF5996 0.66 +0.6
55,737 + GFF5996 0.66 +0.2
55,737 + GFF5996 0.66 -0.8
55,738 - GFF5996 0.66 -0.3
55,968 + GFF5996 0.89 -1.8
55,968 + GFF5996 0.89 +0.1
55,968 + GFF5996 0.89 -0.2
55,968 + GFF5996 0.89 -0.1
55,969 - GFF5996 0.89 -0.4
55,969 - GFF5996 0.89 -1.6
55,969 - GFF5996 0.89 -1.3

Or see this region's nucleotide sequence