Strain Fitness in Variovorax sp. SCN45 around GFF5970

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5969 and GFF5970 overlap by 4 nucleotidesGFF5970 and GFF5971 are separated by 12 nucleotidesGFF5971 and GFF5972 are separated by 24 nucleotides GFF5969 - Transcriptional regulator, GntR family, at 24,065 to 24,745 GFF5969 GFF5970 - Uncharacterized MFS-type transporter, at 24,742 to 26,058 GFF5970 GFF5971 - hypothetical protein, at 26,071 to 26,871 GFF5971 GFF5972 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 26,896 to 27,540 GFF5972 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 23.821 kb on + strandat 23.821 kb on + strandat 23.832 kb on + strandat 23.867 kb on - strandat 24.052 kb on + strandat 24.052 kb on + strandat 24.052 kb on + strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.053 kb on - strandat 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.278 kb on + strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.279 kb on - strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.510 kb on + strand, within GFF5969at 24.525 kb on + strand, within GFF5969at 24.525 kb on + strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.526 kb on - strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.572 kb on + strand, within GFF5969at 24.573 kb on - strand, within GFF5969at 24.573 kb on - strand, within GFF5969at 24.573 kb on - strand, within GFF5969at 24.783 kb on + strandat 24.783 kb on + strandat 24.783 kb on + strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.784 kb on - strandat 24.963 kb on - strand, within GFF5970at 25.273 kb on + strand, within GFF5970at 25.273 kb on + strand, within GFF5970at 25.273 kb on + strand, within GFF5970at 25.273 kb on + strand, within GFF5970at 25.273 kb on + strand, within GFF5970at 25.274 kb on - strand, within GFF5970at 25.274 kb on - strand, within GFF5970at 25.274 kb on - strand, within GFF5970at 25.274 kb on - strand, within GFF5970at 25.318 kb on - strand, within GFF5970at 25.531 kb on + strand, within GFF5970at 25.531 kb on + strand, within GFF5970at 25.532 kb on - strand, within GFF5970at 25.532 kb on - strand, within GFF5970at 25.532 kb on - strand, within GFF5970at 25.532 kb on - strand, within GFF5970at 25.597 kb on + strand, within GFF5970at 25.597 kb on + strand, within GFF5970at 25.598 kb on - strand, within GFF5970at 25.598 kb on - strand, within GFF5970at 25.598 kb on - strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.885 kb on + strand, within GFF5970at 25.886 kb on - strand, within GFF5970at 25.886 kb on - strand, within GFF5970at 26.072 kb on + strandat 26.073 kb on - strandat 26.073 kb on - strandat 26.073 kb on - strandat 26.073 kb on - strandat 26.211 kb on - strand, within GFF5971at 26.294 kb on + strand, within GFF5971at 26.294 kb on + strand, within GFF5971at 26.294 kb on + strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.295 kb on - strand, within GFF5971at 26.354 kb on + strand, within GFF5971at 26.354 kb on + strand, within GFF5971at 26.354 kb on + strand, within GFF5971at 26.432 kb on + strand, within GFF5971at 26.432 kb on + strand, within GFF5971at 26.432 kb on + strand, within GFF5971at 26.433 kb on - strand, within GFF5971at 26.489 kb on + strand, within GFF5971at 26.490 kb on - strand, within GFF5971at 26.573 kb on + strand, within GFF5971at 26.573 kb on + strand, within GFF5971at 26.574 kb on - strand, within GFF5971at 26.574 kb on - strand, within GFF5971at 26.574 kb on - strand, within GFF5971at 26.574 kb on - strand, within GFF5971at 26.574 kb on - strand, within GFF5971at 26.657 kb on + strand, within GFF5971at 26.657 kb on + strand, within GFF5971at 26.657 kb on + strand, within GFF5971at 26.657 kb on + strand, within GFF5971at 26.658 kb on - strand, within GFF5971at 26.658 kb on - strand, within GFF5971at 26.658 kb on - strand, within GFF5971at 26.856 kb on + strandat 26.856 kb on + strandat 26.857 kb on - strandat 26.857 kb on - strandat 26.857 kb on - strandat 26.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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23,821 + -0.0
23,821 + -0.5
23,832 + +0.6
23,867 - +0.6
24,052 + -1.7
24,052 + +0.6
24,052 + -0.9
24,053 - -0.1
24,053 - -0.6
24,053 - -0.4
24,053 - +0.2
24,053 - +0.1
24,053 - +0.3
24,278 + GFF5969 0.31 +1.0
24,278 + GFF5969 0.31 -0.8
24,278 + GFF5969 0.31 +0.1
24,278 + GFF5969 0.31 -0.6
24,278 + GFF5969 0.31 -0.2
24,278 + GFF5969 0.31 -2.9
24,278 + GFF5969 0.31 -0.4
24,278 + GFF5969 0.31 +0.1
24,278 + GFF5969 0.31 +0.3
24,278 + GFF5969 0.31 +0.8
24,278 + GFF5969 0.31 +0.1
24,278 + GFF5969 0.31 -0.7
24,278 + GFF5969 0.31 -0.4
24,279 - GFF5969 0.31 +0.3
24,279 - GFF5969 0.31 -0.3
24,279 - GFF5969 0.31 -0.6
24,279 - GFF5969 0.31 -0.0
24,279 - GFF5969 0.31 +0.1
24,279 - GFF5969 0.31 +1.4
24,279 - GFF5969 0.31 -1.6
24,279 - GFF5969 0.31 -0.5
24,279 - GFF5969 0.31 -0.2
24,279 - GFF5969 0.31 +1.6
24,279 - GFF5969 0.31 +0.3
24,279 - GFF5969 0.31 -0.8
24,279 - GFF5969 0.31 +0.9
24,279 - GFF5969 0.31 -0.6
24,279 - GFF5969 0.31 +0.6
24,279 - GFF5969 0.31 +0.2
24,279 - GFF5969 0.31 -0.8
24,279 - GFF5969 0.31 +0.8
24,279 - GFF5969 0.31 +0.4
24,279 - GFF5969 0.31 -0.4
24,510 + GFF5969 0.65 -0.8
24,510 + GFF5969 0.65 -1.4
24,510 + GFF5969 0.65 -0.2
24,510 + GFF5969 0.65 +0.2
24,525 + GFF5969 0.68 -1.2
24,525 + GFF5969 0.68 -0.4
24,526 - GFF5969 0.68 -0.4
24,526 - GFF5969 0.68 +0.6
24,526 - GFF5969 0.68 -0.3
24,572 + GFF5969 0.74 -2.3
24,572 + GFF5969 0.74 +0.3
24,572 + GFF5969 0.74 +0.2
24,573 - GFF5969 0.75 +1.1
24,573 - GFF5969 0.75 -1.3
24,573 - GFF5969 0.75 -0.1
24,783 + -2.3
24,783 + +0.9
24,783 + +0.8
24,784 - +0.0
24,784 - +0.6
24,784 - +0.3
24,784 - -0.1
24,784 - +0.8
24,784 - +0.2
24,784 - +0.0
24,963 - GFF5970 0.17 -0.0
25,273 + GFF5970 0.40 -0.6
25,273 + GFF5970 0.40 -0.3
25,273 + GFF5970 0.40 -0.2
25,273 + GFF5970 0.40 +0.2
25,273 + GFF5970 0.40 -1.9
25,274 - GFF5970 0.40 -0.6
25,274 - GFF5970 0.40 -1.0
25,274 - GFF5970 0.40 -0.2
25,274 - GFF5970 0.40 -0.1
25,318 - GFF5970 0.44 +3.2
25,531 + GFF5970 0.60 -0.1
25,531 + GFF5970 0.60 -1.0
25,532 - GFF5970 0.60 +0.3
25,532 - GFF5970 0.60 -0.4
25,532 - GFF5970 0.60 -1.5
25,532 - GFF5970 0.60 -0.6
25,597 + GFF5970 0.65 -0.7
25,597 + GFF5970 0.65 +0.4
25,598 - GFF5970 0.65 +0.6
25,598 - GFF5970 0.65 +0.1
25,598 - GFF5970 0.65 -0.3
25,885 + GFF5970 0.87 -1.4
25,885 + GFF5970 0.87 -0.5
25,885 + GFF5970 0.87 -0.9
25,885 + GFF5970 0.87 -0.4
25,885 + GFF5970 0.87 +0.4
25,885 + GFF5970 0.87 +0.5
25,886 - GFF5970 0.87 -0.5
25,886 - GFF5970 0.87 -1.5
26,072 + -0.5
26,073 - -0.3
26,073 - +0.2
26,073 - -1.6
26,073 - +0.6
26,211 - GFF5971 0.17 -0.8
26,294 + GFF5971 0.28 -1.3
26,294 + GFF5971 0.28 +0.4
26,294 + GFF5971 0.28 +0.3
26,295 - GFF5971 0.28 -0.2
26,295 - GFF5971 0.28 -0.2
26,295 - GFF5971 0.28 -0.5
26,295 - GFF5971 0.28 -1.0
26,295 - GFF5971 0.28 +0.8
26,295 - GFF5971 0.28 +0.7
26,354 + GFF5971 0.35 -0.8
26,354 + GFF5971 0.35 -0.1
26,354 + GFF5971 0.35 +0.6
26,432 + GFF5971 0.45 +0.9
26,432 + GFF5971 0.45 -0.5
26,432 + GFF5971 0.45 -2.0
26,433 - GFF5971 0.45 +0.3
26,489 + GFF5971 0.52 +0.1
26,490 - GFF5971 0.52 +1.3
26,573 + GFF5971 0.63 +0.1
26,573 + GFF5971 0.63 -0.3
26,574 - GFF5971 0.63 -0.8
26,574 - GFF5971 0.63 -0.4
26,574 - GFF5971 0.63 -0.9
26,574 - GFF5971 0.63 +1.9
26,574 - GFF5971 0.63 -0.3
26,657 + GFF5971 0.73 -0.2
26,657 + GFF5971 0.73 +0.1
26,657 + GFF5971 0.73 -0.6
26,657 + GFF5971 0.73 -0.0
26,658 - GFF5971 0.73 -1.6
26,658 - GFF5971 0.73 -0.4
26,658 - GFF5971 0.73 -0.9
26,856 + -0.4
26,856 + -0.1
26,857 - -0.7
26,857 - -0.7
26,857 - +0.1
26,884 - -0.6

Or see this region's nucleotide sequence