Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5937 and GFF5938 overlap by 4 nucleotides GFF5938 and GFF5939 are separated by 8 nucleotides GFF5939 and GFF5940 overlap by 8 nucleotides
GFF5937 - T6SS component TssG (ImpH/VasB), at 157,198 to 158,223
GFF5937
GFF5938 - T6SS component TssF (ImpG/VasA), at 158,220 to 160,112
GFF5938
GFF5939 - T6SS lysozyme-like component TssE, at 160,121 to 160,636
GFF5939
GFF5940 - T6SS associated component TagJ (ImpE), at 160,629 to 161,453
GFF5940
Position (kb) 158
159
160
161 Strain fitness (log2 ratio) -2
-1
0
1
2 at 157.631 kb on + strand, within GFF5937 at 157.841 kb on + strand, within GFF5937 at 157.842 kb on - strand, within GFF5937 at 158.527 kb on + strand, within GFF5938 at 158.593 kb on + strand, within GFF5938 at 158.593 kb on + strand, within GFF5938 at 158.594 kb on - strand, within GFF5938 at 158.594 kb on - strand, within GFF5938 at 158.840 kb on - strand, within GFF5938 at 158.926 kb on + strand, within GFF5938 at 159.316 kb on + strand, within GFF5938 at 159.316 kb on + strand, within GFF5938 at 159.317 kb on - strand, within GFF5938 at 159.598 kb on - strand, within GFF5938 at 159.662 kb on - strand, within GFF5938 at 159.662 kb on - strand, within GFF5938 at 159.671 kb on - strand, within GFF5938 at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.123 kb on - strand at 160.123 kb on - strand at 160.175 kb on + strand, within GFF5939 at 160.399 kb on + strand, within GFF5939 at 160.410 kb on + strand, within GFF5939 at 160.957 kb on + strand, within GFF5940 at 160.958 kb on - strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.961 kb on - strand, within GFF5940
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 157,631 + GFF5937 0.42 -0.0 157,841 + GFF5937 0.63 -1.2 157,842 - GFF5937 0.63 -1.1 158,527 + GFF5938 0.16 -1.9 158,593 + GFF5938 0.20 -1.1 158,593 + GFF5938 0.20 -0.1 158,594 - GFF5938 0.20 -1.1 158,594 - GFF5938 0.20 -0.7 158,840 - GFF5938 0.33 +0.3 158,926 + GFF5938 0.37 -1.9 159,316 + GFF5938 0.58 -0.3 159,316 + GFF5938 0.58 -0.4 159,317 - GFF5938 0.58 +0.6 159,598 - GFF5938 0.73 -0.8 159,662 - GFF5938 0.76 -1.1 159,662 - GFF5938 0.76 -0.3 159,671 - GFF5938 0.77 +0.6 160,122 + -1.2 160,122 + -1.0 160,122 + -0.3 160,122 + -0.9 160,123 - +1.8 160,123 - +0.1 160,175 + GFF5939 0.10 +1.0 160,399 + GFF5939 0.54 +1.4 160,410 + GFF5939 0.56 +0.8 160,957 + GFF5940 0.40 -0.2 160,958 - GFF5940 0.40 -0.4 160,960 + GFF5940 0.40 -0.5 160,960 + GFF5940 0.40 -0.2 160,960 + GFF5940 0.40 -1.0 160,961 - GFF5940 0.40 +0.2
Or see this region's nucleotide sequence