Strain Fitness in Variovorax sp. SCN45 around GFF5628

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
5,478	+		GFF5627	0.38	-1.1
5,478	+		GFF5627	0.38	-3.1
5,478	+		GFF5627	0.38	-1.5
5,478	+		GFF5627	0.38	-1.4
5,479	-		GFF5627	0.38	-2.6
5,479	-		GFF5627	0.38	-1.1
5,479	-		GFF5627	0.38	-0.9
5,479	-		GFF5627	0.38	-1.8
5,479	-		GFF5627	0.38	+0.1
5,479	-		GFF5627	0.38	-0.7
5,479	-		GFF5627	0.38	-1.7
5,479	-		GFF5627	0.38	-0.9
5,479	-		GFF5627	0.38	-0.8
5,479	-		GFF5627	0.38	-3.7
5,688	+		GFF5627	0.57	-1.5
5,688	+		GFF5627	0.57	-2.0
5,688	+		GFF5627	0.57	-2.7
5,689	-		GFF5627	0.57	-1.3
5,961	+		GFF5627	0.82	+0.7
5,961	+		GFF5627	0.82	-1.5
5,961	+		GFF5627	0.82	-1.8
5,961	+		GFF5627	0.82	-2.6
5,962	-		GFF5627	0.82	-2.0
6,060	+				-1.2
6,060	+				-2.1
6,060	+				-1.4
6,060	+				-2.1
6,060	+				-1.2
6,060	+				-0.9
6,060	+				-0.2
6,060	+				-0.7
6,060	+				-0.3
6,060	+				-3.5
6,060	+				-0.7
6,060	+				-2.7
6,060	+				-2.6
6,060	+				-1.7
6,061	-				-1.1
6,061	-				-1.7
6,061	-				-1.8
6,061	-				-0.7
6,061	-				-0.7
6,156	+				+0.4
6,156	+				+0.1
6,156	+				+0.0
6,156	+				+0.4
6,156	+				+0.0
6,156	+				-0.9
6,156	+				+0.7
6,156	+				-0.9
6,156	+				+0.2
6,156	+				-1.5
6,157	-				+0.4
6,157	-				-0.2
6,157	-				-0.1
6,157	-				+0.4
6,157	-				-0.7
6,157	-				+0.3
6,157	-				-0.8
6,157	-				+0.1
6,157	-				+0.3
6,157	-				-0.4
6,157	-				+0.2
6,157	-				-0.8
6,185	+				-0.3
6,185	+				-0.6
6,185	+				-0.3
6,186	-				+0.2
6,186	-				-1.1
6,186	-				-1.0
6,186	-				-0.2
6,186	-				+0.2
6,186	-				-1.3
6,186	-				-0.2
6,323	+		GFF5628	0.17	-2.0
6,323	+		GFF5628	0.17	-0.3
6,323	+		GFF5628	0.17	-0.0
6,323	+		GFF5628	0.17	-0.6
6,323	+		GFF5628	0.17	-0.2
6,324	-		GFF5628	0.17	-0.4
6,324	-		GFF5628	0.17	-0.8
6,324	-		GFF5628	0.17	+0.2
6,324	-		GFF5628	0.17	+0.3
6,324	-		GFF5628	0.17	-0.1
6,324	-		GFF5628	0.17	-1.0
6,599	+		GFF5628	0.46	-0.9
6,600	-		GFF5628	0.46	-0.4
6,662	+		GFF5628	0.53	+0.0
6,662	+		GFF5628	0.53	-0.1
6,662	+		GFF5628	0.53	-1.1
6,662	+		GFF5628	0.53	-0.9
6,662	+		GFF5628	0.53	-0.0
6,662	+		GFF5628	0.53	-0.6
6,662	+		GFF5628	0.53	-0.4
6,663	-		GFF5628	0.53	-0.3
6,663	-		GFF5628	0.53	-0.4
6,663	-		GFF5628	0.53	+0.3
6,663	-		GFF5628	0.53	-0.1
6,663	-		GFF5628	0.53	-0.7
7,106	+				-0.8
7,106	+				+1.1
7,210	+				-0.4
7,210	+				+2.3
7,210	+				-0.9
7,210	+				+0.3
7,210	+				+0.9
7,210	+				-0.2
7,211	-				+0.5
7,211	-				-0.2
7,223	+				-0.6
7,223	+				-0.1
7,223	+				+1.1
7,223	+				-0.9
7,224	-				-2.1
7,231	+				-0.3
7,235	+				-0.1
7,235	+				+0.2
7,235	+				-0.0
7,235	+				-0.0
7,235	+				+1.1
7,235	+				-0.1
7,235	+				-0.7
7,236	-				-0.3
7,236	-				+2.1
7,236	-				+0.7
7,236	-				+1.7
7,236	-				-1.1
7,404	+				-0.6
7,404	+				+0.1
7,404	+				-0.4
7,405	-				-0.4
7,405	-				-1.0
7,551	+		GFF5629	0.19	+0.7
7,551	+		GFF5629	0.19	-0.1
7,551	+		GFF5629	0.19	-0.3
7,551	+		GFF5629	0.19	-0.5
7,551	+		GFF5629	0.19	-0.6
7,551	+		GFF5629	0.19	-2.2
7,551	+		GFF5629	0.19	+1.1
7,551	+		GFF5629	0.19	+0.4
7,551	+		GFF5629	0.19	+1.1
7,551	+		GFF5629	0.19	+1.7
7,551	+		GFF5629	0.19	-0.6
7,551	+		GFF5629	0.19	+0.2
7,551	+		GFF5629	0.19	-0.1
7,551	+		GFF5629	0.19	+0.9
7,551	+		GFF5629	0.19	-1.2
7,551	+		GFF5629	0.19	-0.7
7,551	+		GFF5629	0.19	-0.1
7,551	+		GFF5629	0.19	-0.6
7,551	+		GFF5629	0.19	-0.7
7,551	+		GFF5629	0.19	+0.1
7,552	-		GFF5629	0.19	+0.2
7,552	-		GFF5629	0.19	-0.9
7,552	-		GFF5629	0.19	-0.7
7,552	-		GFF5629	0.19	-3.3
7,552	-		GFF5629	0.19	-0.6
7,552	-		GFF5629	0.19	+1.7
7,552	-		GFF5629	0.19	-0.0
7,552	-		GFF5629	0.19	-0.6
7,552	-		GFF5629	0.19	-1.0
7,552	-		GFF5629	0.19	-0.9
7,552	-		GFF5629	0.19	-0.3
7,552	-		GFF5629	0.19	-0.4
7,552	-		GFF5629	0.19	-0.1
7,758	+		GFF5629	0.31	-0.8
7,758	+		GFF5629	0.31	-0.8
7,758	+		GFF5629	0.31	+0.4
7,758	+		GFF5629	0.31	-0.6
7,758	+		GFF5629	0.31	-0.6
7,758	+		GFF5629	0.31	-0.3
7,758	+		GFF5629	0.31	-1.0
7,758	+		GFF5629	0.31	+1.3
7,759	-		GFF5629	0.31	+0.6
7,759	-		GFF5629	0.31	+1.3
7,759	-		GFF5629	0.31	-1.3
7,759	-		GFF5629	0.31	-0.7
7,759	-		GFF5629	0.31	-1.2
7,759	-		GFF5629	0.31	+0.4
7,759	-		GFF5629	0.31	+0.7
7,759	-		GFF5629	0.31	-0.4
7,947	+		GFF5629	0.42	+0.4
7,947	+		GFF5629	0.42	+0.5
7,947	+		GFF5629	0.42	+0.8
7,948	-		GFF5629	0.42	-0.3
7,948	-		GFF5629	0.42	-0.2