Strain Fitness in Variovorax sp. SCN45 around GFF5441

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5440 and GFF5441 are separated by 87 nucleotidesGFF5441 and GFF5442 are separated by 3 nucleotides GFF5440 - RNA polymerase ECF-type sigma factor, at 65,327 to 66,217 GFF5440 GFF5441 - 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein, at 66,305 to 66,766 GFF5441 GFF5442 - Septum-associated rare lipoprotein A, at 66,770 to 67,954 GFF5442 Position (kb) 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.319 kb on + strandat 65.319 kb on + strandat 65.319 kb on + strandat 65.320 kb on - strandat 65.320 kb on - strandat 65.320 kb on - strandat 65.384 kb on + strandat 65.384 kb on + strandat 65.385 kb on - strandat 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.555 kb on + strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 65.556 kb on - strand, within GFF5440at 66.054 kb on - strand, within GFF5440at 66.061 kb on + strand, within GFF5440at 66.064 kb on + strand, within GFF5440at 66.215 kb on + strandat 66.216 kb on - strandat 66.216 kb on - strandat 66.265 kb on + strandat 66.266 kb on - strandat 66.266 kb on - strandat 66.458 kb on + strand, within GFF5441at 66.459 kb on - strand, within GFF5441at 66.459 kb on - strand, within GFF5441at 66.459 kb on - strand, within GFF5441at 66.459 kb on - strand, within GFF5441at 66.551 kb on + strand, within GFF5441at 66.551 kb on + strand, within GFF5441at 66.551 kb on + strand, within GFF5441at 66.551 kb on + strand, within GFF5441at 66.551 kb on + strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 66.552 kb on - strand, within GFF5441at 67.214 kb on + strand, within GFF5442at 67.214 kb on + strand, within GFF5442at 67.215 kb on - strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.224 kb on + strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.225 kb on - strand, within GFF5442at 67.371 kb on + strand, within GFF5442at 67.371 kb on + strand, within GFF5442at 67.371 kb on + strand, within GFF5442at 67.372 kb on - strand, within GFF5442at 67.372 kb on - strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.485 kb on + strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.486 kb on - strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.581 kb on + strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.582 kb on - strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.623 kb on + strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.624 kb on - strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.632 kb on + strand, within GFF5442at 67.633 kb on - strand, within GFF5442at 67.633 kb on - strand, within GFF5442at 67.677 kb on + strand, within GFF5442at 67.677 kb on + strand, within GFF5442at 67.732 kb on - strand, within GFF5442at 67.732 kb on - strand, within GFF5442at 67.752 kb on + strand, within GFF5442at 67.752 kb on + strand, within GFF5442at 67.752 kb on + strand, within GFF5442at 67.752 kb on + strand, within GFF5442at 67.752 kb on + strand, within GFF5442at 67.753 kb on - strand, within GFF5442at 67.753 kb on - strand, within GFF5442at 67.753 kb on - strand, within GFF5442

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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65,319 + -1.1
65,319 + -1.3
65,319 + -0.4
65,320 - -0.5
65,320 - -0.5
65,320 - +0.5
65,384 + +0.8
65,384 + +0.7
65,385 - -1.3
65,555 + GFF5440 0.26 -1.2
65,555 + GFF5440 0.26 +1.6
65,555 + GFF5440 0.26 +1.0
65,555 + GFF5440 0.26 -0.1
65,555 + GFF5440 0.26 -0.0
65,555 + GFF5440 0.26 -1.1
65,555 + GFF5440 0.26 -0.5
65,555 + GFF5440 0.26 +0.2
65,555 + GFF5440 0.26 +0.6
65,555 + GFF5440 0.26 +0.5
65,556 - GFF5440 0.26 -0.3
65,556 - GFF5440 0.26 -0.1
65,556 - GFF5440 0.26 -1.3
65,556 - GFF5440 0.26 -0.3
65,556 - GFF5440 0.26 +0.0
65,556 - GFF5440 0.26 -0.1
65,556 - GFF5440 0.26 -0.9
65,556 - GFF5440 0.26 -0.5
65,556 - GFF5440 0.26 -0.2
65,556 - GFF5440 0.26 -0.8
65,556 - GFF5440 0.26 -0.4
65,556 - GFF5440 0.26 +1.0
65,556 - GFF5440 0.26 -0.7
65,556 - GFF5440 0.26 -0.5
65,556 - GFF5440 0.26 -0.6
65,556 - GFF5440 0.26 -0.9
65,556 - GFF5440 0.26 -0.3
65,556 - GFF5440 0.26 -0.6
65,556 - GFF5440 0.26 +1.0
65,556 - GFF5440 0.26 +0.1
65,556 - GFF5440 0.26 -0.8
65,556 - GFF5440 0.26 -1.0
65,556 - GFF5440 0.26 +0.7
66,054 - GFF5440 0.82 -0.8
66,061 + GFF5440 0.82 -1.1
66,064 + GFF5440 0.83 -3.1
66,215 + -0.6
66,216 - -0.3
66,216 - +0.2
66,265 + -0.1
66,266 - -0.8
66,266 - -0.0
66,458 + GFF5441 0.33 -0.2
66,459 - GFF5441 0.33 +0.8
66,459 - GFF5441 0.33 +0.9
66,459 - GFF5441 0.33 +0.1
66,459 - GFF5441 0.33 -0.6
66,551 + GFF5441 0.53 -0.2
66,551 + GFF5441 0.53 +0.1
66,551 + GFF5441 0.53 +0.3
66,551 + GFF5441 0.53 -0.3
66,551 + GFF5441 0.53 +0.5
66,552 - GFF5441 0.53 -0.6
66,552 - GFF5441 0.53 +0.3
66,552 - GFF5441 0.53 -1.3
66,552 - GFF5441 0.53 +0.1
66,552 - GFF5441 0.53 -0.4
66,552 - GFF5441 0.53 +0.3
67,214 + GFF5442 0.37 +0.9
67,214 + GFF5442 0.37 -0.7
67,215 - GFF5442 0.38 +1.9
67,224 + GFF5442 0.38 +0.8
67,224 + GFF5442 0.38 -0.1
67,224 + GFF5442 0.38 +0.7
67,224 + GFF5442 0.38 -1.1
67,224 + GFF5442 0.38 -0.6
67,224 + GFF5442 0.38 -0.4
67,224 + GFF5442 0.38 -0.7
67,224 + GFF5442 0.38 +0.1
67,224 + GFF5442 0.38 +0.1
67,224 + GFF5442 0.38 -0.7
67,225 - GFF5442 0.38 -1.2
67,225 - GFF5442 0.38 -0.7
67,225 - GFF5442 0.38 +0.6
67,225 - GFF5442 0.38 +0.3
67,225 - GFF5442 0.38 -2.1
67,225 - GFF5442 0.38 -0.8
67,225 - GFF5442 0.38 -0.8
67,371 + GFF5442 0.51 +0.8
67,371 + GFF5442 0.51 -1.4
67,371 + GFF5442 0.51 -0.0
67,372 - GFF5442 0.51 -0.4
67,372 - GFF5442 0.51 -1.7
67,485 + GFF5442 0.60 -0.0
67,485 + GFF5442 0.60 +0.2
67,485 + GFF5442 0.60 +0.5
67,485 + GFF5442 0.60 -0.9
67,485 + GFF5442 0.60 +0.1
67,485 + GFF5442 0.60 +0.1
67,485 + GFF5442 0.60 +0.3
67,485 + GFF5442 0.60 -1.2
67,485 + GFF5442 0.60 +0.2
67,485 + GFF5442 0.60 -0.2
67,485 + GFF5442 0.60 -0.2
67,486 - GFF5442 0.60 -2.2
67,486 - GFF5442 0.60 -0.4
67,486 - GFF5442 0.60 -0.5
67,486 - GFF5442 0.60 -1.0
67,486 - GFF5442 0.60 -0.5
67,486 - GFF5442 0.60 +0.3
67,486 - GFF5442 0.60 -0.4
67,581 + GFF5442 0.68 +0.6
67,581 + GFF5442 0.68 -1.1
67,581 + GFF5442 0.68 +0.7
67,581 + GFF5442 0.68 +0.3
67,581 + GFF5442 0.68 -0.9
67,581 + GFF5442 0.68 -1.4
67,581 + GFF5442 0.68 -0.9
67,581 + GFF5442 0.68 -1.6
67,581 + GFF5442 0.68 -0.7
67,581 + GFF5442 0.68 -1.3
67,581 + GFF5442 0.68 -0.6
67,581 + GFF5442 0.68 -0.8
67,581 + GFF5442 0.68 -0.1
67,581 + GFF5442 0.68 -0.0
67,581 + GFF5442 0.68 +0.1
67,582 - GFF5442 0.69 -0.8
67,582 - GFF5442 0.69 -0.1
67,582 - GFF5442 0.69 -0.6
67,582 - GFF5442 0.69 -1.4
67,582 - GFF5442 0.69 -0.2
67,582 - GFF5442 0.69 +0.0
67,582 - GFF5442 0.69 -0.2
67,582 - GFF5442 0.69 +0.0
67,582 - GFF5442 0.69 -1.0
67,582 - GFF5442 0.69 -0.1
67,582 - GFF5442 0.69 +0.8
67,582 - GFF5442 0.69 -0.6
67,623 + GFF5442 0.72 +0.3
67,623 + GFF5442 0.72 +0.4
67,623 + GFF5442 0.72 -0.3
67,623 + GFF5442 0.72 -0.1
67,623 + GFF5442 0.72 -0.1
67,623 + GFF5442 0.72 -1.3
67,623 + GFF5442 0.72 +0.3
67,623 + GFF5442 0.72 -1.0
67,623 + GFF5442 0.72 -0.6
67,623 + GFF5442 0.72 -1.8
67,623 + GFF5442 0.72 -0.7
67,623 + GFF5442 0.72 -0.0
67,623 + GFF5442 0.72 +0.3
67,623 + GFF5442 0.72 -0.3
67,623 + GFF5442 0.72 +0.7
67,623 + GFF5442 0.72 -0.2
67,623 + GFF5442 0.72 -0.2
67,623 + GFF5442 0.72 +0.1
67,623 + GFF5442 0.72 -0.5
67,623 + GFF5442 0.72 -0.2
67,623 + GFF5442 0.72 +0.3
67,623 + GFF5442 0.72 +0.2
67,623 + GFF5442 0.72 -1.6
67,623 + GFF5442 0.72 -0.5
67,623 + GFF5442 0.72 +0.7
67,623 + GFF5442 0.72 -0.2
67,623 + GFF5442 0.72 -0.3
67,623 + GFF5442 0.72 -0.3
67,623 + GFF5442 0.72 -0.1
67,623 + GFF5442 0.72 -0.2
67,624 - GFF5442 0.72 -0.7
67,624 - GFF5442 0.72 -1.3
67,624 - GFF5442 0.72 -0.1
67,624 - GFF5442 0.72 -0.0
67,624 - GFF5442 0.72 -0.4
67,624 - GFF5442 0.72 -0.5
67,624 - GFF5442 0.72 -0.8
67,624 - GFF5442 0.72 -1.3
67,624 - GFF5442 0.72 -0.4
67,624 - GFF5442 0.72 -0.6
67,624 - GFF5442 0.72 -1.3
67,624 - GFF5442 0.72 +0.7
67,624 - GFF5442 0.72 +0.0
67,624 - GFF5442 0.72 -0.5
67,624 - GFF5442 0.72 -0.9
67,624 - GFF5442 0.72 +0.3
67,624 - GFF5442 0.72 +0.2
67,624 - GFF5442 0.72 +1.3
67,624 - GFF5442 0.72 -0.6
67,624 - GFF5442 0.72 -0.6
67,624 - GFF5442 0.72 +0.4
67,624 - GFF5442 0.72 +0.6
67,624 - GFF5442 0.72 -0.3
67,624 - GFF5442 0.72 +0.6
67,624 - GFF5442 0.72 +1.9
67,624 - GFF5442 0.72 -0.4
67,624 - GFF5442 0.72 -0.7
67,624 - GFF5442 0.72 +0.1
67,624 - GFF5442 0.72 +0.4
67,624 - GFF5442 0.72 +0.1
67,624 - GFF5442 0.72 -0.9
67,624 - GFF5442 0.72 -0.7
67,624 - GFF5442 0.72 -0.2
67,624 - GFF5442 0.72 -0.3
67,624 - GFF5442 0.72 +0.5
67,624 - GFF5442 0.72 +0.6
67,624 - GFF5442 0.72 +0.7
67,624 - GFF5442 0.72 -0.1
67,632 + GFF5442 0.73 +0.2
67,632 + GFF5442 0.73 -0.6
67,632 + GFF5442 0.73 -0.9
67,632 + GFF5442 0.73 -0.1
67,632 + GFF5442 0.73 -0.6
67,632 + GFF5442 0.73 -2.9
67,633 - GFF5442 0.73 -1.3
67,633 - GFF5442 0.73 -1.1
67,677 + GFF5442 0.77 -0.1
67,677 + GFF5442 0.77 +0.9
67,732 - GFF5442 0.81 -1.8
67,732 - GFF5442 0.81 -0.9
67,752 + GFF5442 0.83 +0.1
67,752 + GFF5442 0.83 -0.4
67,752 + GFF5442 0.83 -0.6
67,752 + GFF5442 0.83 +0.4
67,752 + GFF5442 0.83 -0.8
67,753 - GFF5442 0.83 +0.1
67,753 - GFF5442 0.83 -0.9
67,753 - GFF5442 0.83 +0.4

Or see this region's nucleotide sequence