Strain Fitness in Variovorax sp. SCN45 around GFF5178

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5177 and GFF5178 are separated by 60 nucleotidesGFF5178 and GFF5179 overlap by 4 nucleotidesGFF5179 and GFF5180 overlap by 4 nucleotides GFF5177 - hypothetical protein, at 31,002 to 32,117 GFF5177 GFF5178 - Transcriptional regulator, Xre-family with cupin domain, at 32,178 to 32,774 GFF5178 GFF5179 - Acetyltransferase, GNAT family, at 32,771 to 33,334 GFF5179 GFF5180 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 33,331 to 34,464 GFF5180 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.560 kb on + strand, within GFF5177at 31.561 kb on - strand, within GFF5177at 31.561 kb on - strand, within GFF5177at 31.561 kb on - strand, within GFF5177at 31.605 kb on + strand, within GFF5177at 31.605 kb on + strand, within GFF5177at 31.605 kb on + strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.606 kb on - strand, within GFF5177at 31.635 kb on + strand, within GFF5177at 31.635 kb on + strand, within GFF5177at 31.635 kb on + strand, within GFF5177at 31.636 kb on - strand, within GFF5177at 31.636 kb on - strand, within GFF5177at 31.636 kb on - strand, within GFF5177at 31.640 kb on - strand, within GFF5177at 31.785 kb on + strand, within GFF5177at 31.785 kb on + strand, within GFF5177at 31.785 kb on + strand, within GFF5177at 31.786 kb on - strand, within GFF5177at 31.786 kb on - strand, within GFF5177at 31.845 kb on + strand, within GFF5177at 31.845 kb on + strand, within GFF5177at 31.845 kb on + strand, within GFF5177at 31.845 kb on + strand, within GFF5177at 31.845 kb on + strand, within GFF5177at 31.866 kb on + strand, within GFF5177at 31.866 kb on + strand, within GFF5177at 31.866 kb on + strand, within GFF5177at 31.866 kb on + strand, within GFF5177at 31.866 kb on + strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.867 kb on - strand, within GFF5177at 31.908 kb on + strand, within GFF5177at 31.908 kb on + strand, within GFF5177at 31.908 kb on + strand, within GFF5177at 31.908 kb on + strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.909 kb on - strand, within GFF5177at 31.911 kb on + strand, within GFF5177at 31.912 kb on - strand, within GFF5177at 31.912 kb on - strand, within GFF5177at 31.980 kb on + strand, within GFF5177at 31.981 kb on - strand, within GFF5177at 31.981 kb on - strand, within GFF5177at 31.981 kb on - strand, within GFF5177at 31.981 kb on - strand, within GFF5177at 31.981 kb on - strand, within GFF5177at 31.989 kb on + strand, within GFF5177at 31.989 kb on + strand, within GFF5177at 31.990 kb on - strand, within GFF5177at 32.129 kb on + strandat 32.130 kb on - strandat 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.469 kb on + strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.470 kb on - strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.471 kb on + strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.472 kb on - strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.556 kb on + strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.557 kb on - strand, within GFF5178at 32.697 kb on + strand, within GFF5178at 32.697 kb on + strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.698 kb on - strand, within GFF5178at 32.727 kb on + strandat 32.727 kb on + strandat 32.728 kb on - strandat 33.224 kb on + strand, within GFF5179at 33.224 kb on + strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.225 kb on - strand, within GFF5179at 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.311 kb on + strandat 33.312 kb on - strandat 33.333 kb on - strandat 33.333 kb on - strandat 33.333 kb on - strandat 33.395 kb on + strandat 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.461 kb on + strand, within GFF5180at 33.462 kb on - strand, within GFF5180at 33.462 kb on - strand, within GFF5180at 33.606 kb on - strand, within GFF5180

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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31,560 + GFF5177 0.50 -0.3
31,560 + GFF5177 0.50 +2.4
31,560 + GFF5177 0.50 -2.1
31,560 + GFF5177 0.50 +1.0
31,560 + GFF5177 0.50 -0.8
31,560 + GFF5177 0.50 -1.3
31,560 + GFF5177 0.50 +0.2
31,560 + GFF5177 0.50 +0.7
31,561 - GFF5177 0.50 -2.0
31,561 - GFF5177 0.50 -0.5
31,561 - GFF5177 0.50 -1.5
31,605 + GFF5177 0.54 -0.7
31,605 + GFF5177 0.54 -0.7
31,605 + GFF5177 0.54 +0.5
31,606 - GFF5177 0.54 +0.2
31,606 - GFF5177 0.54 -0.0
31,606 - GFF5177 0.54 -1.1
31,606 - GFF5177 0.54 +0.3
31,606 - GFF5177 0.54 +0.1
31,606 - GFF5177 0.54 +0.7
31,606 - GFF5177 0.54 -1.0
31,635 + GFF5177 0.57 -0.9
31,635 + GFF5177 0.57 +0.4
31,635 + GFF5177 0.57 -0.2
31,636 - GFF5177 0.57 -0.9
31,636 - GFF5177 0.57 -0.1
31,636 - GFF5177 0.57 -0.9
31,640 - GFF5177 0.57 +0.9
31,785 + GFF5177 0.70 -0.9
31,785 + GFF5177 0.70 -0.3
31,785 + GFF5177 0.70 -0.5
31,786 - GFF5177 0.70 +0.3
31,786 - GFF5177 0.70 +0.1
31,845 + GFF5177 0.76 +0.1
31,845 + GFF5177 0.76 +1.7
31,845 + GFF5177 0.76 +1.8
31,845 + GFF5177 0.76 -0.4
31,845 + GFF5177 0.76 -0.5
31,866 + GFF5177 0.77 +0.1
31,866 + GFF5177 0.77 -1.0
31,866 + GFF5177 0.77 +0.2
31,866 + GFF5177 0.77 -0.1
31,866 + GFF5177 0.77 -1.3
31,867 - GFF5177 0.78 +0.9
31,867 - GFF5177 0.78 +0.4
31,867 - GFF5177 0.78 -0.0
31,867 - GFF5177 0.78 -0.1
31,867 - GFF5177 0.78 +0.3
31,867 - GFF5177 0.78 +0.2
31,867 - GFF5177 0.78 -0.7
31,908 + GFF5177 0.81 -1.1
31,908 + GFF5177 0.81 -0.9
31,908 + GFF5177 0.81 +0.2
31,908 + GFF5177 0.81 +0.7
31,909 - GFF5177 0.81 -0.2
31,909 - GFF5177 0.81 -0.3
31,909 - GFF5177 0.81 +0.0
31,909 - GFF5177 0.81 +1.7
31,909 - GFF5177 0.81 -0.5
31,909 - GFF5177 0.81 -0.8
31,909 - GFF5177 0.81 -0.0
31,909 - GFF5177 0.81 -1.0
31,911 + GFF5177 0.81 +0.8
31,912 - GFF5177 0.82 -0.5
31,912 - GFF5177 0.82 +0.2
31,980 + GFF5177 0.88 +0.8
31,981 - GFF5177 0.88 +0.1
31,981 - GFF5177 0.88 +1.1
31,981 - GFF5177 0.88 -0.2
31,981 - GFF5177 0.88 -0.0
31,981 - GFF5177 0.88 -0.0
31,989 + GFF5177 0.88 -0.6
31,989 + GFF5177 0.88 -0.1
31,990 - GFF5177 0.89 -0.2
32,129 + -0.7
32,130 - -0.0
32,469 + GFF5178 0.49 -0.5
32,469 + GFF5178 0.49 -0.1
32,469 + GFF5178 0.49 -1.7
32,469 + GFF5178 0.49 -1.0
32,469 + GFF5178 0.49 -0.2
32,469 + GFF5178 0.49 -0.5
32,470 - GFF5178 0.49 -0.4
32,470 - GFF5178 0.49 +0.1
32,470 - GFF5178 0.49 -1.8
32,470 - GFF5178 0.49 -0.5
32,470 - GFF5178 0.49 -0.1
32,471 + GFF5178 0.49 +0.2
32,471 + GFF5178 0.49 -0.8
32,471 + GFF5178 0.49 -0.3
32,471 + GFF5178 0.49 -0.3
32,471 + GFF5178 0.49 -1.4
32,471 + GFF5178 0.49 -2.1
32,471 + GFF5178 0.49 -0.4
32,471 + GFF5178 0.49 -0.1
32,471 + GFF5178 0.49 -0.1
32,471 + GFF5178 0.49 +0.4
32,471 + GFF5178 0.49 -0.8
32,471 + GFF5178 0.49 -0.3
32,471 + GFF5178 0.49 +0.7
32,471 + GFF5178 0.49 +0.5
32,471 + GFF5178 0.49 +0.1
32,471 + GFF5178 0.49 -1.0
32,472 - GFF5178 0.49 -0.3
32,472 - GFF5178 0.49 +2.2
32,472 - GFF5178 0.49 -1.5
32,556 + GFF5178 0.63 -0.3
32,556 + GFF5178 0.63 +0.5
32,556 + GFF5178 0.63 -0.6
32,556 + GFF5178 0.63 -0.7
32,557 - GFF5178 0.63 +0.0
32,557 - GFF5178 0.63 -0.1
32,557 - GFF5178 0.63 -0.4
32,557 - GFF5178 0.63 -0.7
32,697 + GFF5178 0.87 -0.7
32,697 + GFF5178 0.87 -0.9
32,698 - GFF5178 0.87 +0.4
32,698 - GFF5178 0.87 -0.4
32,698 - GFF5178 0.87 -0.2
32,727 + +0.1
32,727 + -1.7
32,728 - -0.0
33,224 + GFF5179 0.80 -0.1
33,224 + GFF5179 0.80 -0.3
33,225 - GFF5179 0.80 -0.4
33,225 - GFF5179 0.80 -0.4
33,225 - GFF5179 0.80 +0.1
33,225 - GFF5179 0.80 -0.3
33,311 + +0.2
33,311 + -0.3
33,311 + -0.7
33,311 + -0.5
33,311 + -0.8
33,312 - -0.2
33,333 - -0.4
33,333 - -1.0
33,333 - -1.0
33,395 + -0.4
33,461 + GFF5180 0.11 +0.9
33,461 + GFF5180 0.11 -0.7
33,461 + GFF5180 0.11 +0.2
33,461 + GFF5180 0.11 -1.5
33,462 - GFF5180 0.12 +0.1
33,462 - GFF5180 0.12 +0.7
33,606 - GFF5180 0.24 +0.7

Or see this region's nucleotide sequence