Strain Fitness in Variovorax sp. SCN45 around GFF5150

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5149 and GFF5150 are separated by 121 nucleotidesGFF5150 and GFF5151 are separated by 100 nucleotidesGFF5151 and GFF5152 are separated by 10 nucleotides GFF5149 - Taurine ABC transporter, ATP-binding protein TauB, at 2,241 to 3,164 GFF5149 GFF5150 - Taurine ABC transporter, permease protein TauC, at 3,286 to 4,155 GFF5150 GFF5151 - Histidinol-phosphatase [alternative form] (EC 3.1.3.15), at 4,256 to 5,032 GFF5151 GFF5152 - Uncharacterized membrane-anchored protein Rmet_0180, at 5,043 to 5,237 GFF5152 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2at 2.425 kb on - strand, within GFF5149at 2.745 kb on + strand, within GFF5149at 2.745 kb on + strand, within GFF5149at 2.745 kb on + strand, within GFF5149at 2.745 kb on + strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 2.746 kb on - strand, within GFF5149at 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.280 kb on + strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.281 kb on - strandat 3.320 kb on - strandat 3.583 kb on + strand, within GFF5150at 3.584 kb on - strand, within GFF5150at 3.584 kb on - strand, within GFF5150at 3.584 kb on - strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.792 kb on + strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.793 kb on - strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.796 kb on + strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.797 kb on - strand, within GFF5150at 3.847 kb on + strand, within GFF5150at 3.847 kb on + strand, within GFF5150at 3.847 kb on + strand, within GFF5150at 3.847 kb on + strand, within GFF5150at 3.847 kb on + strand, within GFF5150at 3.848 kb on - strand, within GFF5150at 3.848 kb on - strand, within GFF5150at 3.848 kb on - strand, within GFF5150at 3.848 kb on - strand, within GFF5150at 3.848 kb on - strand, within GFF5150at 3.868 kb on + strand, within GFF5150at 3.868 kb on + strand, within GFF5150at 3.869 kb on - strand, within GFF5150at 3.869 kb on - strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.009 kb on + strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.010 kb on - strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.036 kb on + strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.037 kb on - strand, within GFF5150at 4.125 kb on + strandat 4.125 kb on + strandat 4.125 kb on + strandat 4.125 kb on + strandat 4.125 kb on + strandat 4.125 kb on + strandat 4.130 kb on + strandat 4.220 kb on + strandat 4.220 kb on + strandat 4.221 kb on - strandat 5.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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2,425 - GFF5149 0.20 -0.3
2,745 + GFF5149 0.55 -0.0
2,745 + GFF5149 0.55 +0.4
2,745 + GFF5149 0.55 -0.8
2,745 + GFF5149 0.55 -0.3
2,746 - GFF5149 0.55 +0.4
2,746 - GFF5149 0.55 -0.3
2,746 - GFF5149 0.55 -1.6
2,746 - GFF5149 0.55 -0.2
2,746 - GFF5149 0.55 -0.4
2,746 - GFF5149 0.55 -1.3
2,746 - GFF5149 0.55 +0.1
3,280 + -0.1
3,280 + -1.0
3,280 + -0.4
3,280 + +2.1
3,280 + -0.6
3,280 + -1.3
3,280 + +0.1
3,280 + -0.8
3,280 + -0.5
3,280 + -1.3
3,280 + -1.0
3,280 + -0.2
3,280 + +1.2
3,280 + +0.0
3,280 + -0.7
3,280 + +0.4
3,281 - +0.7
3,281 - -0.4
3,281 - -0.1
3,281 - -1.0
3,281 - +1.0
3,281 - -0.0
3,281 - -0.4
3,281 - -0.9
3,281 - +0.1
3,281 - -2.0
3,281 - +0.9
3,281 - -0.7
3,281 - -0.8
3,281 - -0.9
3,281 - -1.8
3,281 - -0.5
3,281 - -0.1
3,320 - -1.1
3,583 + GFF5150 0.34 -1.3
3,584 - GFF5150 0.34 +1.0
3,584 - GFF5150 0.34 +0.2
3,584 - GFF5150 0.34 -1.1
3,792 + GFF5150 0.58 -0.6
3,792 + GFF5150 0.58 -0.9
3,792 + GFF5150 0.58 +0.4
3,792 + GFF5150 0.58 -0.1
3,792 + GFF5150 0.58 -1.3
3,792 + GFF5150 0.58 -1.1
3,792 + GFF5150 0.58 +0.1
3,792 + GFF5150 0.58 -0.3
3,793 - GFF5150 0.58 -0.3
3,793 - GFF5150 0.58 -0.7
3,793 - GFF5150 0.58 -0.5
3,793 - GFF5150 0.58 +0.2
3,793 - GFF5150 0.58 -0.4
3,793 - GFF5150 0.58 -1.6
3,793 - GFF5150 0.58 -1.1
3,796 + GFF5150 0.59 -0.1
3,796 + GFF5150 0.59 +2.2
3,796 + GFF5150 0.59 -0.4
3,796 + GFF5150 0.59 -0.2
3,796 + GFF5150 0.59 +0.5
3,796 + GFF5150 0.59 -0.0
3,796 + GFF5150 0.59 +1.1
3,796 + GFF5150 0.59 -0.5
3,796 + GFF5150 0.59 -0.5
3,796 + GFF5150 0.59 -0.6
3,796 + GFF5150 0.59 -0.3
3,797 - GFF5150 0.59 -1.0
3,797 - GFF5150 0.59 -0.8
3,797 - GFF5150 0.59 -0.1
3,797 - GFF5150 0.59 -0.7
3,797 - GFF5150 0.59 -0.3
3,797 - GFF5150 0.59 -0.3
3,797 - GFF5150 0.59 -0.8
3,797 - GFF5150 0.59 -1.0
3,797 - GFF5150 0.59 -0.6
3,797 - GFF5150 0.59 +0.1
3,797 - GFF5150 0.59 -0.2
3,797 - GFF5150 0.59 -1.4
3,847 + GFF5150 0.64 +0.9
3,847 + GFF5150 0.64 -0.4
3,847 + GFF5150 0.64 +0.4
3,847 + GFF5150 0.64 -0.7
3,847 + GFF5150 0.64 -0.9
3,848 - GFF5150 0.65 -0.7
3,848 - GFF5150 0.65 -1.1
3,848 - GFF5150 0.65 +0.6
3,848 - GFF5150 0.65 -1.0
3,848 - GFF5150 0.65 -1.8
3,868 + GFF5150 0.67 -1.1
3,868 + GFF5150 0.67 +0.7
3,869 - GFF5150 0.67 -0.7
3,869 - GFF5150 0.67 -1.3
4,009 + GFF5150 0.83 -0.5
4,009 + GFF5150 0.83 -0.5
4,009 + GFF5150 0.83 -0.9
4,009 + GFF5150 0.83 -1.9
4,009 + GFF5150 0.83 -0.5
4,009 + GFF5150 0.83 -0.0
4,009 + GFF5150 0.83 +2.7
4,009 + GFF5150 0.83 -0.9
4,009 + GFF5150 0.83 -0.7
4,009 + GFF5150 0.83 -0.1
4,009 + GFF5150 0.83 -0.1
4,009 + GFF5150 0.83 +0.0
4,010 - GFF5150 0.83 +0.3
4,010 - GFF5150 0.83 -0.4
4,010 - GFF5150 0.83 -0.4
4,010 - GFF5150 0.83 +1.8
4,010 - GFF5150 0.83 -1.1
4,010 - GFF5150 0.83 -2.2
4,010 - GFF5150 0.83 -0.1
4,010 - GFF5150 0.83 -0.9
4,010 - GFF5150 0.83 -0.6
4,010 - GFF5150 0.83 -0.7
4,036 + GFF5150 0.86 -1.0
4,036 + GFF5150 0.86 +0.3
4,036 + GFF5150 0.86 -0.1
4,036 + GFF5150 0.86 -1.2
4,036 + GFF5150 0.86 -0.6
4,036 + GFF5150 0.86 -0.8
4,036 + GFF5150 0.86 +0.4
4,036 + GFF5150 0.86 -0.7
4,036 + GFF5150 0.86 -0.8
4,037 - GFF5150 0.86 -0.3
4,037 - GFF5150 0.86 -1.7
4,037 - GFF5150 0.86 -0.3
4,037 - GFF5150 0.86 -0.2
4,037 - GFF5150 0.86 +0.9
4,037 - GFF5150 0.86 -0.3
4,037 - GFF5150 0.86 -1.0
4,037 - GFF5150 0.86 -0.5
4,037 - GFF5150 0.86 -0.6
4,037 - GFF5150 0.86 -0.8
4,037 - GFF5150 0.86 -0.8
4,125 + -0.3
4,125 + -0.0
4,125 + -1.3
4,125 + +0.7
4,125 + -1.5
4,125 + -0.1
4,130 + -0.7
4,220 + +2.7
4,220 + -0.3
4,221 - -0.5
5,031 - -2.0

Or see this region's nucleotide sequence