Strain Fitness in Variovorax sp. SCN45 around GFF5132

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5130 and GFF5131 are separated by 17 nucleotidesGFF5131 and GFF5132 are separated by 52 nucleotidesGFF5132 and GFF5133 are separated by 168 nucleotides GFF5130 - hypothetical protein, at 229,735 to 230,991 GFF5130 GFF5131 - no description, at 231,009 to 231,443 GFF5131 GFF5132 - no description, at 231,496 to 232,404 GFF5132 GFF5133 - hypothetical protein, at 232,573 to 233,625 GFF5133 Position (kb) 231 232 233Strain fitness (log2 ratio) -2 -1 0 1 2at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.551 kb on + strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.552 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 230.669 kb on - strand, within GFF5130at 231.040 kb on - strandat 231.055 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.144 kb on + strand, within GFF5131at 231.145 kb on - strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.246 kb on + strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.247 kb on - strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.333 kb on + strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.334 kb on - strand, within GFF5131at 231.363 kb on + strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.364 kb on - strand, within GFF5131at 231.460 kb on + strandat 231.460 kb on + strandat 231.460 kb on + strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.461 kb on - strandat 231.530 kb on - strandat 231.530 kb on - strandat 231.542 kb on + strandat 231.542 kb on + strandat 231.543 kb on - strandat 231.543 kb on - strandat 231.565 kb on + strandat 231.565 kb on + strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.566 kb on - strandat 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.712 kb on + strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.713 kb on - strand, within GFF5132at 231.901 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.944 kb on + strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.945 kb on - strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.994 kb on + strand, within GFF5132at 231.995 kb on - strand, within GFF5132at 232.118 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.129 kb on + strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.130 kb on - strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.233 kb on + strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.234 kb on - strand, within GFF5132at 232.239 kb on - strand, within GFF5132at 232.373 kb on + strandat 232.373 kb on + strandat 232.373 kb on + strandat 232.374 kb on - strandat 232.374 kb on - strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.417 kb on + strandat 232.418 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.420 kb on - strandat 232.532 kb on + strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.533 kb on - strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.535 kb on + strandat 232.536 kb on - strandat 232.536 kb on - strandat 232.560 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.618 kb on + strandat 232.619 kb on - strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.649 kb on + strandat 232.650 kb on - strandat 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.724 kb on + strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.725 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.836 kb on - strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.839 kb on + strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.840 kb on - strand, within GFF5133at 232.880 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.916 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.991 kb on + strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 232.992 kb on - strand, within GFF5133at 233.124 kb on + strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.125 kb on - strand, within GFF5133at 233.156 kb on + strand, within GFF5133at 233.157 kb on - strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.285 kb on + strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.286 kb on - strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.320 kb on + strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.321 kb on - strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.324 kb on + strand, within GFF5133at 233.325 kb on - strand, within GFF5133at 233.325 kb on - strand, within GFF5133

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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230,551 + GFF5130 0.65 +0.0
230,551 + GFF5130 0.65 -1.9
230,551 + GFF5130 0.65 +0.7
230,551 + GFF5130 0.65 +0.7
230,552 - GFF5130 0.65 +0.3
230,552 - GFF5130 0.65 -0.4
230,669 - GFF5130 0.74 -0.4
230,669 - GFF5130 0.74 -1.0
230,669 - GFF5130 0.74 +0.9
231,040 - +0.2
231,055 + GFF5131 0.11 -0.3
231,144 + GFF5131 0.31 -0.8
231,144 + GFF5131 0.31 -1.0
231,144 + GFF5131 0.31 -1.7
231,144 + GFF5131 0.31 -0.5
231,144 + GFF5131 0.31 -0.2
231,144 + GFF5131 0.31 +1.5
231,144 + GFF5131 0.31 +0.0
231,144 + GFF5131 0.31 -0.7
231,144 + GFF5131 0.31 -1.5
231,145 - GFF5131 0.31 +0.5
231,246 + GFF5131 0.54 -0.1
231,246 + GFF5131 0.54 -0.5
231,246 + GFF5131 0.54 +0.2
231,246 + GFF5131 0.54 -0.5
231,246 + GFF5131 0.54 +1.2
231,247 - GFF5131 0.55 +0.2
231,247 - GFF5131 0.55 -1.0
231,247 - GFF5131 0.55 -0.4
231,247 - GFF5131 0.55 -0.2
231,247 - GFF5131 0.55 -1.2
231,247 - GFF5131 0.55 -0.9
231,247 - GFF5131 0.55 -0.3
231,247 - GFF5131 0.55 +0.0
231,247 - GFF5131 0.55 -0.5
231,333 + GFF5131 0.74 -0.0
231,333 + GFF5131 0.74 -0.5
231,333 + GFF5131 0.74 -0.5
231,333 + GFF5131 0.74 +0.4
231,333 + GFF5131 0.74 +0.7
231,333 + GFF5131 0.74 -0.7
231,333 + GFF5131 0.74 +0.1
231,334 - GFF5131 0.75 +0.2
231,334 - GFF5131 0.75 -1.3
231,334 - GFF5131 0.75 -0.1
231,334 - GFF5131 0.75 +0.0
231,334 - GFF5131 0.75 -0.9
231,334 - GFF5131 0.75 +2.6
231,334 - GFF5131 0.75 -0.8
231,334 - GFF5131 0.75 -1.0
231,334 - GFF5131 0.75 -0.5
231,334 - GFF5131 0.75 +2.4
231,334 - GFF5131 0.75 +0.1
231,334 - GFF5131 0.75 -0.1
231,334 - GFF5131 0.75 +0.7
231,334 - GFF5131 0.75 -0.3
231,363 + GFF5131 0.81 +0.0
231,364 - GFF5131 0.82 +0.1
231,364 - GFF5131 0.82 -0.4
231,460 + +0.4
231,460 + +0.7
231,460 + +0.4
231,461 - -0.2
231,461 - -0.2
231,461 - -0.4
231,461 - -0.3
231,461 - +0.7
231,461 - +0.8
231,461 - -0.1
231,461 - +0.1
231,530 - -0.5
231,530 - +0.5
231,542 + +0.4
231,542 + +0.8
231,543 - -0.3
231,543 - -0.4
231,565 + -0.6
231,565 + +0.3
231,566 - -0.9
231,566 - -0.6
231,566 - -0.7
231,712 + GFF5132 0.24 +0.8
231,712 + GFF5132 0.24 -0.7
231,712 + GFF5132 0.24 -0.1
231,712 + GFF5132 0.24 -0.8
231,713 - GFF5132 0.24 -0.6
231,713 - GFF5132 0.24 +0.7
231,901 + GFF5132 0.45 +0.5
231,944 + GFF5132 0.49 -0.8
231,944 + GFF5132 0.49 +1.1
231,944 + GFF5132 0.49 +0.6
231,945 - GFF5132 0.49 -0.3
231,945 - GFF5132 0.49 +0.4
231,994 + GFF5132 0.55 +1.8
231,994 + GFF5132 0.55 +0.8
231,994 + GFF5132 0.55 +0.3
231,994 + GFF5132 0.55 +0.4
231,994 + GFF5132 0.55 -1.0
231,994 + GFF5132 0.55 -1.0
231,995 - GFF5132 0.55 -0.6
232,118 + GFF5132 0.68 +1.3
232,129 + GFF5132 0.70 -0.2
232,129 + GFF5132 0.70 -1.1
232,129 + GFF5132 0.70 +0.4
232,129 + GFF5132 0.70 -1.4
232,130 - GFF5132 0.70 +1.0
232,130 - GFF5132 0.70 -0.4
232,233 + GFF5132 0.81 +2.4
232,233 + GFF5132 0.81 +0.1
232,233 + GFF5132 0.81 -0.7
232,233 + GFF5132 0.81 +0.2
232,233 + GFF5132 0.81 -0.2
232,234 - GFF5132 0.81 -1.0
232,234 - GFF5132 0.81 +0.8
232,239 - GFF5132 0.82 +0.0
232,373 + +0.2
232,373 + -1.2
232,373 + -0.4
232,374 - +0.6
232,374 - +0.0
232,417 + -0.1
232,417 + -0.0
232,417 + -1.0
232,418 - -0.0
232,420 - +0.5
232,420 - -0.2
232,420 - +0.4
232,532 + -0.5
232,533 - +0.6
232,533 - -0.3
232,533 - -0.5
232,535 + -0.0
232,535 + -0.1
232,535 + +0.8
232,535 + -1.3
232,535 + +1.8
232,535 + -0.8
232,536 - -1.0
232,536 - -1.1
232,560 + +0.0
232,618 + +0.4
232,618 + -1.3
232,618 + -0.5
232,619 - +0.4
232,649 + -0.6
232,649 + -0.4
232,649 + +0.5
232,650 - +0.4
232,724 + GFF5133 0.14 +0.3
232,724 + GFF5133 0.14 +0.2
232,724 + GFF5133 0.14 -0.3
232,724 + GFF5133 0.14 +0.5
232,724 + GFF5133 0.14 -0.0
232,724 + GFF5133 0.14 -0.3
232,724 + GFF5133 0.14 +1.2
232,724 + GFF5133 0.14 +1.6
232,724 + GFF5133 0.14 -0.9
232,724 + GFF5133 0.14 -0.8
232,725 - GFF5133 0.14 -1.3
232,725 - GFF5133 0.14 +0.1
232,725 - GFF5133 0.14 -0.3
232,725 - GFF5133 0.14 +0.1
232,725 - GFF5133 0.14 -0.1
232,725 - GFF5133 0.14 -1.0
232,836 - GFF5133 0.25 -0.6
232,836 - GFF5133 0.25 +0.2
232,836 - GFF5133 0.25 -0.1
232,839 + GFF5133 0.25 +0.1
232,839 + GFF5133 0.25 +0.1
232,839 + GFF5133 0.25 +0.1
232,839 + GFF5133 0.25 +1.4
232,839 + GFF5133 0.25 +0.2
232,839 + GFF5133 0.25 -0.5
232,839 + GFF5133 0.25 +1.5
232,839 + GFF5133 0.25 -1.0
232,840 - GFF5133 0.25 -0.3
232,840 - GFF5133 0.25 -0.6
232,840 - GFF5133 0.25 -0.6
232,840 - GFF5133 0.25 +2.0
232,840 - GFF5133 0.25 -2.1
232,840 - GFF5133 0.25 +0.0
232,880 + GFF5133 0.29 +0.2
232,916 + GFF5133 0.33 -0.5
232,916 + GFF5133 0.33 -0.4
232,991 + GFF5133 0.40 -0.2
232,991 + GFF5133 0.40 +0.1
232,992 - GFF5133 0.40 -0.0
232,992 - GFF5133 0.40 -0.3
233,124 + GFF5133 0.52 +0.8
233,125 - GFF5133 0.52 +0.0
233,125 - GFF5133 0.52 -0.2
233,125 - GFF5133 0.52 -1.2
233,156 + GFF5133 0.55 -0.6
233,157 - GFF5133 0.55 -0.7
233,285 + GFF5133 0.68 -0.5
233,285 + GFF5133 0.68 +0.2
233,286 - GFF5133 0.68 -0.6
233,286 - GFF5133 0.68 +0.6
233,320 + GFF5133 0.71 -0.5
233,320 + GFF5133 0.71 -0.5
233,320 + GFF5133 0.71 -0.2
233,320 + GFF5133 0.71 +0.2
233,320 + GFF5133 0.71 -0.4
233,320 + GFF5133 0.71 -1.0
233,320 + GFF5133 0.71 -0.1
233,320 + GFF5133 0.71 -0.3
233,320 + GFF5133 0.71 -1.0
233,320 + GFF5133 0.71 +0.6
233,320 + GFF5133 0.71 +0.7
233,320 + GFF5133 0.71 +0.2
233,321 - GFF5133 0.71 +0.7
233,321 - GFF5133 0.71 +0.2
233,321 - GFF5133 0.71 -0.8
233,321 - GFF5133 0.71 -0.4
233,321 - GFF5133 0.71 -0.1
233,321 - GFF5133 0.71 -1.0
233,321 - GFF5133 0.71 +1.4
233,321 - GFF5133 0.71 +0.3
233,324 + GFF5133 0.71 +0.9
233,324 + GFF5133 0.71 +0.2
233,324 + GFF5133 0.71 +0.4
233,324 + GFF5133 0.71 +0.4
233,325 - GFF5133 0.71 +0.4
233,325 - GFF5133 0.71 -0.4

Or see this region's nucleotide sequence