Strain Fitness in Variovorax sp. SCN45 around GFF5038

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
137,577	+				-0.3
137,577	+				+0.2
137,577	+				-0.4
137,577	+				-0.7
137,577	+				+0.8
137,577	+				-1.4
137,577	+				+0.7
137,577	+				+0.0
137,577	+				+0.5
137,577	+				-1.1
137,577	+				-0.4
137,577	+				+1.0
137,577	+				+1.0
137,577	+				+0.6
137,578	-				+0.2
137,578	-				+1.1
137,578	-				-0.5
137,578	-				-0.4
137,578	-				-0.0
137,613	+		GFF5037	0.12	-0.4
137,613	+		GFF5037	0.12	+1.6
137,613	+		GFF5037	0.12	-0.5
137,613	+		GFF5037	0.12	+0.0
137,614	-		GFF5037	0.12	-1.5
137,614	-		GFF5037	0.12	-0.8
137,622	+		GFF5037	0.13	-0.2
137,622	+		GFF5037	0.13	-0.2
137,622	+		GFF5037	0.13	-0.4
137,622	+		GFF5037	0.13	+0.8
137,622	+		GFF5037	0.13	-0.2
137,622	+		GFF5037	0.13	-0.5
137,622	+		GFF5037	0.13	+0.6
137,622	+		GFF5037	0.13	-0.4
137,622	+		GFF5037	0.13	-0.5
137,623	-		GFF5037	0.13	-0.0
137,623	-		GFF5037	0.13	-1.1
137,623	-		GFF5037	0.13	-0.2
137,623	-		GFF5037	0.13	-1.0
137,623	-		GFF5037	0.13	+0.3
137,623	-		GFF5037	0.13	+0.7
137,623	-		GFF5037	0.13	-1.0
137,623	-		GFF5037	0.13	-0.2
137,623	-		GFF5037	0.13	+0.0
137,623	-		GFF5037	0.13	+0.7
137,649	+		GFF5037	0.16	-0.5
137,650	-		GFF5037	0.16	+1.1
137,826	+		GFF5037	0.32	+0.1
137,826	+		GFF5037	0.32	+1.1
137,827	-		GFF5037	0.33	-1.0
137,827	-		GFF5037	0.33	-0.9
137,892	+		GFF5037	0.39	-1.0
137,892	+		GFF5037	0.39	-1.6
137,892	+		GFF5037	0.39	-1.0
137,893	-		GFF5037	0.39	-0.6
137,893	-		GFF5037	0.39	-0.6
137,893	-		GFF5037	0.39	+0.6
137,893	-		GFF5037	0.39	-0.6
137,893	-		GFF5037	0.39	-1.1
137,964	+		GFF5037	0.46	-0.3
137,964	+		GFF5037	0.46	-0.6
137,964	+		GFF5037	0.46	+0.8
137,964	+		GFF5037	0.46	+0.1
137,964	+		GFF5037	0.46	-0.6
137,964	+		GFF5037	0.46	+0.9
137,964	+		GFF5037	0.46	-0.2
137,964	+		GFF5037	0.46	-0.9
137,964	+		GFF5037	0.46	+2.8
137,964	+		GFF5037	0.46	-0.0
137,964	+		GFF5037	0.46	+0.8
137,965	-		GFF5037	0.46	-0.1
137,965	-		GFF5037	0.46	+0.2
137,965	-		GFF5037	0.46	-0.3
137,965	-		GFF5037	0.46	-1.2
138,117	+		GFF5037	0.60	+0.3
138,117	+		GFF5037	0.60	-0.6
138,117	+		GFF5037	0.60	-0.3
138,117	+		GFF5037	0.60	-1.8
138,118	-		GFF5037	0.60	-0.2
138,118	-		GFF5037	0.60	+0.8
138,118	-		GFF5037	0.60	-0.7
138,118	-		GFF5037	0.60	-1.4
138,118	-		GFF5037	0.60	-0.2
138,118	-		GFF5037	0.60	-0.8
138,118	-		GFF5037	0.60	-0.3
138,118	-		GFF5037	0.60	-0.4
138,118	-		GFF5037	0.60	+0.6
138,118	-		GFF5037	0.60	+0.2
138,118	-		GFF5037	0.60	-0.6
138,231	+		GFF5037	0.71	+1.0
138,231	+		GFF5037	0.71	+0.7
138,232	-		GFF5037	0.71	+0.2
138,366	+		GFF5037	0.84	+0.2
138,367	-		GFF5037	0.84	+1.8
138,526	+				+0.4
138,526	+				+1.8
138,526	+				+0.1
138,526	+				+2.6
138,526	+				+0.3
138,526	+				-0.6
138,527	-				-0.3
138,527	-				-1.3
138,599	+				+0.3
138,599	+				-1.1
138,600	-				+0.0
138,600	-				+0.1
138,656	+				+0.6
138,656	+				-0.4
138,656	+				-0.2
138,657	-				-0.4
138,860	+		GFF5038	0.26	+0.0
139,025	+		GFF5038	0.39	-0.2
139,025	+		GFF5038	0.39	-1.6
139,025	+		GFF5038	0.39	-0.3
139,025	+		GFF5038	0.39	-0.5
139,026	-		GFF5038	0.39	+0.2
139,268	+		GFF5038	0.59	+0.2
139,268	+		GFF5038	0.59	-1.2
139,583	+		GFF5038	0.85	-0.8
139,583	+		GFF5038	0.85	-1.4
139,583	+		GFF5038	0.85	-0.8
139,584	-		GFF5038	0.85	-1.3
139,754	+				-1.4
139,754	+				-1.2
139,754	+				-0.7
139,754	+				+3.0
139,754	+				-0.9
139,755	-				+1.0
139,755	-				-0.6
139,755	-				+0.2
139,755	-				+0.6
139,755	-				-1.0
139,755	-				-1.4
139,755	-				-0.5
139,813	+		GFF5039	0.11	-1.1
139,813	+		GFF5039	0.11	+0.8
139,813	+		GFF5039	0.11	+0.4
139,813	+		GFF5039	0.11	-0.2
139,813	+		GFF5039	0.11	-0.3
139,968	+		GFF5039	0.53	+0.8
139,968	+		GFF5039	0.53	+1.8
140,263	-				-1.3
140,263	-				-0.3
140,379	+				-0.7
140,380	-				-0.2
140,477	+				+0.2
140,477	+				-0.0
140,477	+				+1.2
140,477	+				-0.5
140,478	-				-0.3
140,478	-				+0.1
140,532	+				-0.7
140,532	+				-0.5
140,532	+				-0.2
140,533	-				-0.0
140,735	+		GFF5040	0.16	-1.5
140,735	+		GFF5040	0.16	-0.6
140,736	-		GFF5040	0.16	+1.4
140,768	+		GFF5040	0.18	+0.0
140,769	-		GFF5040	0.18	-0.2