Strain Fitness in Variovorax sp. SCN45 around GFF4967

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
67,031	+				+0.2
67,031	+				+1.3
67,174	+		GFF4966	0.38	+0.9
67,174	+		GFF4966	0.38	-0.3
67,175	-		GFF4966	0.38	-0.5
67,175	-		GFF4966	0.38	-0.2
67,175	-		GFF4966	0.38	-0.1
67,337	+				-0.8
67,338	-				-0.4
67,428	+				+2.2
67,428	+				+0.0
67,428	+				-0.5
67,429	-				+0.8
67,429	-				-0.2
67,429	-				-0.2
67,429	-				-0.3
67,450	+				-0.5
67,451	-				-0.4
67,451	-				+0.0
67,451	-				-0.7
67,512	+				-0.2
67,512	+				+0.5
67,512	+				-0.8
67,512	+				+1.5
67,512	+				+1.2
67,648	+				-0.2
67,649	-				-0.7
67,649	-				-0.7
67,818	-				+0.0
68,036	+		GFF4967	0.28	+0.7
68,631	+				+0.0
68,631	+				+0.3
68,631	+				-0.1
68,632	-				-0.1
68,632	-				-0.5
68,737	-		GFF4968	0.14	-0.8
68,737	-		GFF4968	0.14	+0.4
68,809	-		GFF4968	0.18	+0.9
68,943	+		GFF4968	0.26	-0.8
68,944	-		GFF4968	0.26	-0.6
68,949	+		GFF4968	0.26	-0.5
68,949	+		GFF4968	0.26	+0.5
69,078	+		GFF4968	0.34	+0.7
69,079	-		GFF4968	0.34	-0.3
69,103	-		GFF4968	0.35	-1.3
69,354	+		GFF4968	0.50	-1.4