Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4946 and GFF4947 overlap by 4 nucleotides GFF4947 and GFF4948 are separated by 180 nucleotides
GFF4946 - Glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 40,412 to 42,181
GFF4946
GFF4947 - Erythritol kinase EryA (EC 2.7.1.27), at 42,178 to 43,665
GFF4947
GFF4948 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 43,846 to 44,892
GFF4948
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 41.202 kb on + strand, within GFF4946 at 41.203 kb on - strand, within GFF4946 at 41.292 kb on + strand, within GFF4946 at 41.328 kb on + strand, within GFF4946 at 41.328 kb on + strand, within GFF4946 at 41.528 kb on - strand, within GFF4946 at 41.556 kb on + strand, within GFF4946 at 41.557 kb on - strand, within GFF4946 at 41.557 kb on - strand, within GFF4946 at 41.557 kb on - strand, within GFF4946 at 41.557 kb on - strand, within GFF4946 at 41.557 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.758 kb on - strand, within GFF4946 at 41.974 kb on - strand, within GFF4946 at 42.359 kb on + strand, within GFF4947 at 42.360 kb on - strand, within GFF4947 at 42.770 kb on + strand, within GFF4947 at 42.770 kb on + strand, within GFF4947 at 42.770 kb on + strand, within GFF4947 at 42.771 kb on - strand, within GFF4947 at 42.771 kb on - strand, within GFF4947 at 42.771 kb on - strand, within GFF4947 at 43.175 kb on + strand, within GFF4947 at 43.175 kb on + strand, within GFF4947 at 43.175 kb on + strand, within GFF4947 at 43.175 kb on + strand, within GFF4947 at 43.176 kb on - strand, within GFF4947 at 43.403 kb on + strand, within GFF4947 at 43.403 kb on + strand, within GFF4947 at 43.403 kb on + strand, within GFF4947 at 43.403 kb on + strand, within GFF4947 at 43.403 kb on + strand, within GFF4947 at 43.404 kb on - strand, within GFF4947 at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.720 kb on + strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.721 kb on - strand at 43.743 kb on + strand at 43.743 kb on + strand at 43.744 kb on - strand at 43.855 kb on - strand at 43.975 kb on + strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 43.976 kb on - strand, within GFF4948 at 44.008 kb on + strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.009 kb on - strand, within GFF4948 at 44.023 kb on + strand, within GFF4948 at 44.024 kb on - strand, within GFF4948 at 44.090 kb on - strand, within GFF4948 at 44.479 kb on + strand, within GFF4948 at 44.480 kb on - strand, within GFF4948
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 41,202 + GFF4946 0.45 +0.7 41,203 - GFF4946 0.45 -0.3 41,292 + GFF4946 0.50 -0.2 41,328 + GFF4946 0.52 +0.3 41,328 + GFF4946 0.52 -0.3 41,528 - GFF4946 0.63 +0.8 41,556 + GFF4946 0.65 +1.6 41,557 - GFF4946 0.65 +0.0 41,557 - GFF4946 0.65 -0.0 41,557 - GFF4946 0.65 -0.0 41,557 - GFF4946 0.65 -0.5 41,557 - GFF4946 0.65 -0.1 41,758 - GFF4946 0.76 -0.4 41,758 - GFF4946 0.76 -0.2 41,758 - GFF4946 0.76 -0.9 41,758 - GFF4946 0.76 +0.5 41,758 - GFF4946 0.76 +0.2 41,758 - GFF4946 0.76 -0.8 41,974 - GFF4946 0.88 -1.2 42,359 + GFF4947 0.12 -0.2 42,360 - GFF4947 0.12 -0.0 42,770 + GFF4947 0.40 +1.2 42,770 + GFF4947 0.40 -0.4 42,770 + GFF4947 0.40 +1.4 42,771 - GFF4947 0.40 +0.2 42,771 - GFF4947 0.40 +0.2 42,771 - GFF4947 0.40 +0.0 43,175 + GFF4947 0.67 -0.8 43,175 + GFF4947 0.67 -0.7 43,175 + GFF4947 0.67 +0.1 43,175 + GFF4947 0.67 -0.3 43,176 - GFF4947 0.67 -0.2 43,403 + GFF4947 0.82 -0.3 43,403 + GFF4947 0.82 -0.9 43,403 + GFF4947 0.82 +1.5 43,403 + GFF4947 0.82 +0.7 43,403 + GFF4947 0.82 -1.3 43,404 - GFF4947 0.82 +0.8 43,720 + -0.8 43,720 + +0.6 43,720 + -0.5 43,720 + -0.4 43,720 + +0.1 43,720 + -0.2 43,720 + +0.3 43,720 + -1.3 43,720 + -1.5 43,720 + -0.8 43,721 - +0.1 43,721 - -0.0 43,721 - +0.6 43,721 - +0.5 43,721 - -0.8 43,721 - +0.4 43,721 - +0.5 43,721 - -0.6 43,721 - +0.7 43,721 - -0.8 43,721 - -0.3 43,721 - +0.8 43,721 - -1.3 43,743 + -0.6 43,743 + -0.1 43,744 - -0.7 43,855 - -0.7 43,975 + GFF4948 0.12 +0.1 43,976 - GFF4948 0.12 -1.0 43,976 - GFF4948 0.12 +0.8 44,008 + GFF4948 0.15 -1.4 44,009 - GFF4948 0.16 +0.2 44,009 - GFF4948 0.16 +0.5 44,023 + GFF4948 0.17 -1.2 44,024 - GFF4948 0.17 -0.0 44,090 - GFF4948 0.23 -0.4 44,479 + GFF4948 0.60 -0.8 44,480 - GFF4948 0.61 +0.8
Or see this region's nucleotide sequence