Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4767 and GFF4768 are separated by 187 nucleotides GFF4768 and GFF4769 overlap by 8 nucleotides GFF4769 and GFF4770 are separated by 37 nucleotides
GFF4767 - Efflux ABC transporter, permease/ATP-binding protein, at 133,327 to 135,087
GFF4767
GFF4768 - Transcriptional regulator, MarR family, at 135,275 to 135,724
GFF4768
GFF4769 - Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system, at 135,717 to 137,189
GFF4769
GFF4770 - Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA, at 137,227 to 138,549
GFF4770
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.827 kb on - strand, within GFF4767 at 134.827 kb on - strand, within GFF4767 at 134.828 kb on + strand, within GFF4767 at 134.828 kb on + strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 134.829 kb on - strand, within GFF4767 at 135.102 kb on + strand at 135.102 kb on + strand at 135.102 kb on + strand at 135.103 kb on - strand at 135.103 kb on - strand at 135.103 kb on - strand at 135.103 kb on - strand at 135.103 kb on - strand at 135.123 kb on - strand at 135.257 kb on + strand at 135.258 kb on - strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.272 kb on + strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.273 kb on - strand at 135.296 kb on + strand at 135.296 kb on + strand at 135.297 kb on - strand at 135.324 kb on + strand, within GFF4768 at 135.336 kb on + strand, within GFF4768 at 135.336 kb on + strand, within GFF4768 at 135.336 kb on + strand, within GFF4768 at 135.371 kb on + strand, within GFF4768 at 135.372 kb on - strand, within GFF4768 at 135.392 kb on + strand, within GFF4768 at 135.392 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.590 kb on + strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.591 kb on - strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.662 kb on + strand, within GFF4768 at 135.663 kb on - strand, within GFF4768 at 135.663 kb on - strand, within GFF4768 at 135.663 kb on - strand, within GFF4768 at 135.663 kb on - strand, within GFF4768 at 135.712 kb on + strand at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.095 kb on + strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.096 kb on - strand, within GFF4769 at 136.101 kb on + strand, within GFF4769 at 136.102 kb on - strand, within GFF4769 at 136.102 kb on - strand, within GFF4769 at 136.284 kb on + strand, within GFF4769 at 136.284 kb on + strand, within GFF4769 at 136.284 kb on + strand, within GFF4769 at 136.284 kb on + strand, within GFF4769 at 136.285 kb on - strand, within GFF4769 at 136.285 kb on - strand, within GFF4769 at 136.285 kb on - strand, within GFF4769 at 136.680 kb on + strand, within GFF4769 at 136.680 kb on + strand, within GFF4769 at 136.680 kb on + strand, within GFF4769 at 136.863 kb on + strand, within GFF4769 at 136.980 kb on + strand, within GFF4769 at 136.980 kb on + strand, within GFF4769 at 137.022 kb on + strand, within GFF4769 at 137.022 kb on + strand, within GFF4769 at 137.022 kb on + strand, within GFF4769 at 137.022 kb on + strand, within GFF4769 at 137.022 kb on + strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.023 kb on - strand, within GFF4769 at 137.235 kb on + strand at 137.235 kb on + strand at 137.368 kb on + strand, within GFF4770 at 137.368 kb on + strand, within GFF4770 at 137.368 kb on + strand, within GFF4770 at 137.392 kb on + strand, within GFF4770 at 137.392 kb on + strand, within GFF4770 at 137.392 kb on + strand, within GFF4770 at 137.393 kb on - strand, within GFF4770 at 137.393 kb on - strand, within GFF4770 at 137.413 kb on + strand, within GFF4770 at 137.413 kb on + strand, within GFF4770 at 137.413 kb on + strand, within GFF4770 at 137.413 kb on + strand, within GFF4770 at 137.414 kb on - strand, within GFF4770 at 137.602 kb on + strand, within GFF4770 at 137.603 kb on - strand, within GFF4770 at 137.603 kb on - strand, within GFF4770 at 137.603 kb on - strand, within GFF4770 at 137.917 kb on + strand, within GFF4770 at 137.917 kb on + strand, within GFF4770 at 137.917 kb on + strand, within GFF4770 at 137.918 kb on - strand, within GFF4770 at 137.918 kb on - strand, within GFF4770 at 137.962 kb on + strand, within GFF4770 at 137.962 kb on + strand, within GFF4770 at 137.963 kb on - strand, within GFF4770 at 137.963 kb on - strand, within GFF4770 at 138.124 kb on + strand, within GFF4770 at 138.124 kb on + strand, within GFF4770 at 138.125 kb on - strand, within GFF4770 at 138.125 kb on - strand, within GFF4770 at 138.142 kb on + strand, within GFF4770 at 138.143 kb on - strand, within GFF4770 at 138.143 kb on - strand, within GFF4770 at 138.143 kb on - strand, within GFF4770
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL remove 134,827 - GFF4767 0.85 +0.9 134,827 - GFF4767 0.85 -1.0 134,828 + GFF4767 0.85 +0.0 134,828 + GFF4767 0.85 -1.0 134,829 - GFF4767 0.85 -0.6 134,829 - GFF4767 0.85 -0.1 134,829 - GFF4767 0.85 -0.2 134,829 - GFF4767 0.85 -1.1 134,829 - GFF4767 0.85 +0.3 134,829 - GFF4767 0.85 -0.2 135,102 + -0.5 135,102 + -0.1 135,102 + -0.4 135,103 - +0.9 135,103 - -0.6 135,103 - -0.7 135,103 - +1.7 135,103 - -0.5 135,123 - -0.5 135,257 + -1.2 135,258 - +0.4 135,272 + -0.3 135,272 + -1.0 135,272 + -0.7 135,272 + +0.3 135,272 + +1.4 135,272 + +0.6 135,272 + +0.1 135,272 + +0.6 135,272 + -0.3 135,272 + -1.4 135,272 + +0.4 135,272 + +0.5 135,272 + -0.6 135,272 + -1.4 135,272 + -0.9 135,273 - +0.2 135,273 - -1.2 135,273 - +1.0 135,273 - -0.9 135,273 - +0.0 135,273 - -0.2 135,273 - -0.3 135,273 - -2.0 135,273 - -1.4 135,273 - -0.2 135,273 - +0.4 135,296 + -0.3 135,296 + -0.1 135,297 - +0.4 135,324 + GFF4768 0.11 -0.3 135,336 + GFF4768 0.14 +0.1 135,336 + GFF4768 0.14 +0.7 135,336 + GFF4768 0.14 -1.0 135,371 + GFF4768 0.21 +0.4 135,372 - GFF4768 0.22 -0.2 135,392 + GFF4768 0.26 +0.1 135,392 + GFF4768 0.26 +0.4 135,590 + GFF4768 0.70 -0.9 135,590 + GFF4768 0.70 -0.2 135,590 + GFF4768 0.70 -0.9 135,590 + GFF4768 0.70 -0.7 135,590 + GFF4768 0.70 -1.6 135,590 + GFF4768 0.70 -0.4 135,590 + GFF4768 0.70 -1.2 135,591 - GFF4768 0.70 -0.8 135,591 - GFF4768 0.70 +0.1 135,591 - GFF4768 0.70 +1.4 135,591 - GFF4768 0.70 -0.8 135,591 - GFF4768 0.70 -1.0 135,591 - GFF4768 0.70 -0.1 135,591 - GFF4768 0.70 -0.7 135,662 + GFF4768 0.86 -0.3 135,662 + GFF4768 0.86 -0.8 135,662 + GFF4768 0.86 -2.7 135,662 + GFF4768 0.86 -1.0 135,662 + GFF4768 0.86 -1.0 135,662 + GFF4768 0.86 -0.3 135,662 + GFF4768 0.86 -0.2 135,663 - GFF4768 0.86 -2.7 135,663 - GFF4768 0.86 -0.6 135,663 - GFF4768 0.86 +0.9 135,663 - GFF4768 0.86 -0.2 135,712 + +1.4 136,095 + GFF4769 0.26 +0.1 136,095 + GFF4769 0.26 +0.0 136,095 + GFF4769 0.26 -1.3 136,095 + GFF4769 0.26 +0.8 136,095 + GFF4769 0.26 +0.8 136,095 + GFF4769 0.26 -0.6 136,095 + GFF4769 0.26 -0.7 136,095 + GFF4769 0.26 -0.3 136,095 + GFF4769 0.26 -0.3 136,095 + GFF4769 0.26 -0.1 136,095 + GFF4769 0.26 +0.3 136,095 + GFF4769 0.26 -0.4 136,095 + GFF4769 0.26 -0.4 136,095 + GFF4769 0.26 -0.3 136,095 + GFF4769 0.26 -2.8 136,095 + GFF4769 0.26 -0.6 136,095 + GFF4769 0.26 +0.4 136,095 + GFF4769 0.26 +0.7 136,095 + GFF4769 0.26 -0.4 136,095 + GFF4769 0.26 -0.5 136,095 + GFF4769 0.26 -0.2 136,095 + GFF4769 0.26 -0.6 136,095 + GFF4769 0.26 +0.2 136,095 + GFF4769 0.26 +0.3 136,095 + GFF4769 0.26 +0.3 136,095 + GFF4769 0.26 -0.5 136,096 - GFF4769 0.26 +0.2 136,096 - GFF4769 0.26 +0.1 136,096 - GFF4769 0.26 +0.0 136,096 - GFF4769 0.26 -0.1 136,096 - GFF4769 0.26 -2.4 136,096 - GFF4769 0.26 +2.4 136,096 - GFF4769 0.26 -1.0 136,096 - GFF4769 0.26 +1.8 136,096 - GFF4769 0.26 -0.6 136,096 - GFF4769 0.26 -0.8 136,096 - GFF4769 0.26 -0.2 136,096 - GFF4769 0.26 -0.6 136,096 - GFF4769 0.26 +0.1 136,096 - GFF4769 0.26 +0.2 136,096 - GFF4769 0.26 -1.8 136,096 - GFF4769 0.26 +0.5 136,096 - GFF4769 0.26 -0.1 136,096 - GFF4769 0.26 -0.5 136,101 + GFF4769 0.26 -1.6 136,102 - GFF4769 0.26 +0.2 136,102 - GFF4769 0.26 -0.2 136,284 + GFF4769 0.38 +0.3 136,284 + GFF4769 0.38 +0.6 136,284 + GFF4769 0.38 +1.4 136,284 + GFF4769 0.38 +0.4 136,285 - GFF4769 0.39 +0.7 136,285 - GFF4769 0.39 -2.3 136,285 - GFF4769 0.39 -0.5 136,680 + GFF4769 0.65 +1.0 136,680 + GFF4769 0.65 -0.2 136,680 + GFF4769 0.65 +0.2 136,863 + GFF4769 0.78 +1.1 136,980 + GFF4769 0.86 -0.6 136,980 + GFF4769 0.86 +0.6 137,022 + GFF4769 0.89 +0.2 137,022 + GFF4769 0.89 +0.5 137,022 + GFF4769 0.89 -0.1 137,022 + GFF4769 0.89 +0.4 137,022 + GFF4769 0.89 +0.8 137,023 - GFF4769 0.89 +0.0 137,023 - GFF4769 0.89 +1.4 137,023 - GFF4769 0.89 +0.4 137,023 - GFF4769 0.89 -2.2 137,023 - GFF4769 0.89 -0.5 137,023 - GFF4769 0.89 +0.6 137,235 + +0.1 137,235 + -1.4 137,368 + GFF4770 0.11 -1.4 137,368 + GFF4770 0.11 -0.2 137,368 + GFF4770 0.11 -0.2 137,392 + GFF4770 0.12 +0.9 137,392 + GFF4770 0.12 +0.2 137,392 + GFF4770 0.12 -1.4 137,393 - GFF4770 0.13 +0.9 137,393 - GFF4770 0.13 +0.8 137,413 + GFF4770 0.14 -0.1 137,413 + GFF4770 0.14 -0.4 137,413 + GFF4770 0.14 +0.8 137,413 + GFF4770 0.14 -1.8 137,414 - GFF4770 0.14 -1.4 137,602 + GFF4770 0.28 +0.9 137,603 - GFF4770 0.28 +0.1 137,603 - GFF4770 0.28 +0.0 137,603 - GFF4770 0.28 -0.7 137,917 + GFF4770 0.52 +0.5 137,917 + GFF4770 0.52 -0.0 137,917 + GFF4770 0.52 -0.0 137,918 - GFF4770 0.52 +0.1 137,918 - GFF4770 0.52 -1.4 137,962 + GFF4770 0.56 -0.1 137,962 + GFF4770 0.56 -0.6 137,963 - GFF4770 0.56 +0.8 137,963 - GFF4770 0.56 +0.3 138,124 + GFF4770 0.68 -0.1 138,124 + GFF4770 0.68 +0.6 138,125 - GFF4770 0.68 +0.1 138,125 - GFF4770 0.68 -0.6 138,142 + GFF4770 0.69 -0.8 138,143 - GFF4770 0.69 -0.2 138,143 - GFF4770 0.69 +0.0 138,143 - GFF4770 0.69 +1.4
Or see this region's nucleotide sequence