Strain Fitness in Variovorax sp. SCN45 around GFF4721

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
81,744	+		GFF4720	0.11	-0.3
81,744	+		GFF4720	0.11	-0.3
81,745	-		GFF4720	0.11	+0.3
81,748	+		GFF4720	0.12	+1.6
81,748	+		GFF4720	0.12	-0.3
81,749	-		GFF4720	0.12	+0.0
81,749	-		GFF4720	0.12	+0.2
81,749	-		GFF4720	0.12	-0.7
81,749	-		GFF4720	0.12	-0.1
81,749	-		GFF4720	0.12	+0.0
81,960	+		GFF4720	0.35	-1.4
81,961	-		GFF4720	0.36	-0.5
82,071	+		GFF4720	0.48	-0.6
82,194	-		GFF4720	0.62	-0.5
82,452	+				-1.0
82,520	+				-0.7
82,520	+				-0.4
82,521	-				-0.6
82,521	-				-0.9
82,613	-				-0.2
82,613	-				-0.4
82,791	+		GFF4721	0.12	-1.1
82,791	+		GFF4721	0.12	-0.1
82,791	+		GFF4721	0.12	-1.2
82,791	+		GFF4721	0.12	+0.4
82,792	-		GFF4721	0.12	-0.7
82,792	-		GFF4721	0.12	+0.2
82,792	-		GFF4721	0.12	-1.1
82,792	-		GFF4721	0.12	-0.5
83,046	+		GFF4721	0.39	+0.9
83,047	-		GFF4721	0.39	-0.3
83,047	-		GFF4721	0.39	-1.6
83,047	-		GFF4721	0.39	-0.1
83,274	+		GFF4721	0.64	-0.2
83,275	-		GFF4721	0.64	-0.2
83,343	+		GFF4721	0.72	-1.0
83,343	+		GFF4721	0.72	+0.0
83,343	+		GFF4721	0.72	+0.4
83,343	+		GFF4721	0.72	+1.4
83,343	+		GFF4721	0.72	-0.8
83,343	+		GFF4721	0.72	-0.3
83,343	+		GFF4721	0.72	-0.6
83,344	-		GFF4721	0.72	-0.1
83,344	-		GFF4721	0.72	+1.9
83,413	-		GFF4721	0.79	-2.6
83,413	-		GFF4721	0.79	-0.1
83,413	-		GFF4721	0.79	-0.0
83,445	+		GFF4721	0.83	-1.7
83,445	+		GFF4721	0.83	-2.3
83,656	+				+0.9
83,656	+				+0.2
83,656	+				-0.5
83,656	+				+0.3
83,656	+				-1.7
83,656	+				-0.2
83,656	+				-1.1
83,656	+				-0.2
83,657	-				+0.3
83,657	-				-0.3
83,657	-				+1.4
83,657	-				-0.5
83,657	-				-0.4
83,657	-				-0.5
83,713	+				+3.7
83,714	-				-0.0
83,714	-				-0.3
83,807	-		GFF4722	0.15	-0.5
83,818	+		GFF4722	0.16	+0.1
83,818	+		GFF4722	0.16	-0.4
83,819	-		GFF4722	0.16	+0.1
83,819	-		GFF4722	0.16	+1.8
83,860	+		GFF4722	0.19	-0.2
83,860	+		GFF4722	0.19	+0.3
83,860	+		GFF4722	0.19	-0.2
83,860	+		GFF4722	0.19	-0.9
83,861	-		GFF4722	0.19	+1.1
83,861	-		GFF4722	0.19	-0.7
83,861	-		GFF4722	0.19	+0.1
83,861	-		GFF4722	0.19	+0.1
83,861	-		GFF4722	0.19	+0.0
83,861	-		GFF4722	0.19	-0.4
83,863	+		GFF4722	0.19	-0.7
83,864	-		GFF4722	0.19	-0.9
83,881	+		GFF4722	0.21	-0.8
83,881	+		GFF4722	0.21	+0.1
83,923	+		GFF4722	0.24	-2.7
83,923	+		GFF4722	0.24	-0.2
83,924	-		GFF4722	0.24	+0.3
83,990	-		GFF4722	0.29	-0.1
84,215	-		GFF4722	0.47	-0.3
84,215	-		GFF4722	0.47	-0.2
84,382	+		GFF4722	0.60	-0.6
84,382	+		GFF4722	0.60	-0.2
84,382	+		GFF4722	0.60	+1.7
84,382	+		GFF4722	0.60	-0.2
84,382	+		GFF4722	0.60	+0.8
84,382	+		GFF4722	0.60	-0.0
84,383	-		GFF4722	0.60	+0.5
84,383	-		GFF4722	0.60	-0.3
84,383	-		GFF4722	0.60	-0.9
84,383	-		GFF4722	0.60	-0.2
84,383	-		GFF4722	0.60	-0.1
84,406	+		GFF4722	0.62	-0.6
84,406	+		GFF4722	0.62	+0.1
84,406	+		GFF4722	0.62	+0.5
84,406	+		GFF4722	0.62	-0.1
84,406	+		GFF4722	0.62	+0.0
84,406	+		GFF4722	0.62	+0.0
84,406	+		GFF4722	0.62	+1.7
84,406	+		GFF4722	0.62	-1.0
84,407	-		GFF4722	0.62	+0.9
84,407	-		GFF4722	0.62	-1.1
84,407	-		GFF4722	0.62	-1.6
84,407	-		GFF4722	0.62	-0.4
84,407	-		GFF4722	0.62	+0.2
84,454	+		GFF4722	0.66	-0.5
84,455	-		GFF4722	0.66	-1.1