Strain Fitness in Variovorax sp. SCN45 around GFF4714

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4713 and GFF4714 are separated by 11 nucleotidesGFF4714 and GFF4715 overlap by 1 nucleotides GFF4713 - Uncharacterized protein YhiN, at 75,263 to 76,468 GFF4713 GFF4714 - putative lipoprotein, at 76,480 to 77,271 GFF4714 GFF4715 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 77,271 to 78,401 GFF4715 Position (kb) 76 77 78Strain fitness (log2 ratio) -2 -1 0 1 2 3at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.706 kb on - strand, within GFF4713at 75.841 kb on - strand, within GFF4713at 75.841 kb on - strand, within GFF4713at 75.876 kb on - strand, within GFF4713at 75.876 kb on - strand, within GFF4713at 76.029 kb on + strand, within GFF4713at 76.053 kb on - strand, within GFF4713at 76.053 kb on - strand, within GFF4713at 76.225 kb on - strand, within GFF4713at 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.517 kb on + strandat 76.518 kb on - strandat 76.518 kb on - strandat 76.518 kb on - strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.535 kb on + strandat 76.536 kb on - strandat 76.536 kb on - strandat 76.536 kb on - strandat 76.653 kb on - strand, within GFF4714at 76.653 kb on - strand, within GFF4714at 76.653 kb on - strand, within GFF4714at 76.736 kb on + strand, within GFF4714at 76.736 kb on + strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.737 kb on - strand, within GFF4714at 76.826 kb on + strand, within GFF4714at 76.826 kb on + strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.827 kb on - strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.997 kb on + strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 76.998 kb on - strand, within GFF4714at 77.212 kb on + strandat 77.212 kb on + strandat 77.213 kb on - strandat 77.326 kb on + strandat 77.327 kb on - strandat 77.327 kb on - strandat 77.327 kb on - strandat 77.344 kb on + strandat 77.344 kb on + strandat 77.344 kb on + strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.345 kb on - strandat 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.392 kb on + strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.393 kb on - strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.407 kb on + strand, within GFF4715at 77.408 kb on - strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.419 kb on + strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.420 kb on - strand, within GFF4715at 77.488 kb on + strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.489 kb on - strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.560 kb on + strand, within GFF4715at 77.561 kb on - strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.596 kb on + strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.597 kb on - strand, within GFF4715at 77.728 kb on + strand, within GFF4715at 77.728 kb on + strand, within GFF4715at 77.729 kb on - strand, within GFF4715at 77.729 kb on - strand, within GFF4715at 77.746 kb on + strand, within GFF4715at 77.746 kb on + strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 77.747 kb on - strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.043 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.208 kb on + strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.209 kb on - strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.229 kb on + strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.230 kb on - strand, within GFF4715at 78.259 kb on + strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715at 78.260 kb on - strand, within GFF4715

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
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75,706 - GFF4713 0.37 -1.9
75,706 - GFF4713 0.37 +0.1
75,706 - GFF4713 0.37 -0.5
75,706 - GFF4713 0.37 -0.6
75,706 - GFF4713 0.37 -0.2
75,841 - GFF4713 0.48 -0.5
75,841 - GFF4713 0.48 +0.8
75,876 - GFF4713 0.51 +0.4
75,876 - GFF4713 0.51 +1.8
76,029 + GFF4713 0.64 -0.2
76,053 - GFF4713 0.66 +1.7
76,053 - GFF4713 0.66 +0.1
76,225 - GFF4713 0.80 -0.4
76,517 + +0.2
76,517 + -0.6
76,517 + +0.3
76,517 + -0.2
76,517 + +0.0
76,517 + -0.9
76,517 + +0.2
76,517 + -1.8
76,518 - -0.3
76,518 - -0.6
76,518 - -1.2
76,535 + -0.3
76,535 + +0.0
76,535 + +0.4
76,536 - -0.6
76,536 - -0.1
76,536 - -1.0
76,653 - GFF4714 0.22 +0.1
76,653 - GFF4714 0.22 -0.4
76,653 - GFF4714 0.22 -0.8
76,736 + GFF4714 0.32 -0.5
76,736 + GFF4714 0.32 -0.1
76,737 - GFF4714 0.32 -0.4
76,737 - GFF4714 0.32 +0.8
76,737 - GFF4714 0.32 -0.8
76,737 - GFF4714 0.32 -0.3
76,737 - GFF4714 0.32 -0.3
76,826 + GFF4714 0.44 -2.0
76,826 + GFF4714 0.44 +0.0
76,827 - GFF4714 0.44 -2.1
76,827 - GFF4714 0.44 -0.5
76,827 - GFF4714 0.44 -0.5
76,827 - GFF4714 0.44 -0.4
76,827 - GFF4714 0.44 +0.1
76,997 + GFF4714 0.65 -0.9
76,997 + GFF4714 0.65 -0.8
76,997 + GFF4714 0.65 +0.1
76,998 - GFF4714 0.65 -0.4
76,998 - GFF4714 0.65 -1.4
76,998 - GFF4714 0.65 -0.8
76,998 - GFF4714 0.65 -0.3
76,998 - GFF4714 0.65 +0.5
77,212 + -0.3
77,212 + -1.6
77,213 - -0.1
77,326 + +0.3
77,327 - -0.9
77,327 - -1.4
77,327 - +0.2
77,344 + -1.0
77,344 + -0.7
77,344 + +0.9
77,345 - +0.1
77,345 - +3.4
77,345 - +0.1
77,345 - -0.5
77,345 - -1.8
77,392 + GFF4715 0.11 -0.2
77,392 + GFF4715 0.11 -0.2
77,392 + GFF4715 0.11 +0.7
77,392 + GFF4715 0.11 -0.4
77,392 + GFF4715 0.11 +1.4
77,393 - GFF4715 0.11 +0.0
77,393 - GFF4715 0.11 -0.1
77,393 - GFF4715 0.11 -0.1
77,393 - GFF4715 0.11 +0.1
77,393 - GFF4715 0.11 -0.4
77,393 - GFF4715 0.11 -0.4
77,393 - GFF4715 0.11 -0.3
77,393 - GFF4715 0.11 -1.4
77,393 - GFF4715 0.11 +1.7
77,393 - GFF4715 0.11 +0.4
77,393 - GFF4715 0.11 -0.0
77,407 + GFF4715 0.12 +0.1
77,407 + GFF4715 0.12 -0.1
77,407 + GFF4715 0.12 -0.3
77,407 + GFF4715 0.12 -0.5
77,407 + GFF4715 0.12 -0.7
77,408 - GFF4715 0.12 +0.7
77,419 + GFF4715 0.13 +1.7
77,419 + GFF4715 0.13 -1.0
77,419 + GFF4715 0.13 -0.0
77,419 + GFF4715 0.13 -0.8
77,420 - GFF4715 0.13 -0.6
77,420 - GFF4715 0.13 -1.5
77,420 - GFF4715 0.13 +0.1
77,420 - GFF4715 0.13 -0.4
77,420 - GFF4715 0.13 -1.0
77,420 - GFF4715 0.13 -0.5
77,488 + GFF4715 0.19 -0.5
77,489 - GFF4715 0.19 -0.3
77,489 - GFF4715 0.19 +0.4
77,489 - GFF4715 0.19 -0.1
77,560 + GFF4715 0.26 +0.7
77,560 + GFF4715 0.26 +1.7
77,560 + GFF4715 0.26 -0.5
77,560 + GFF4715 0.26 +0.6
77,560 + GFF4715 0.26 +0.0
77,560 + GFF4715 0.26 +0.2
77,560 + GFF4715 0.26 +0.2
77,560 + GFF4715 0.26 +1.8
77,560 + GFF4715 0.26 +0.6
77,561 - GFF4715 0.26 +0.4
77,596 + GFF4715 0.29 +0.5
77,596 + GFF4715 0.29 +0.5
77,596 + GFF4715 0.29 -0.1
77,596 + GFF4715 0.29 +0.0
77,596 + GFF4715 0.29 -0.1
77,596 + GFF4715 0.29 +0.3
77,596 + GFF4715 0.29 +0.9
77,596 + GFF4715 0.29 -0.5
77,597 - GFF4715 0.29 -0.5
77,597 - GFF4715 0.29 -0.6
77,597 - GFF4715 0.29 +0.5
77,597 - GFF4715 0.29 -0.3
77,597 - GFF4715 0.29 -2.0
77,597 - GFF4715 0.29 -0.0
77,597 - GFF4715 0.29 -0.9
77,597 - GFF4715 0.29 -0.5
77,597 - GFF4715 0.29 +0.0
77,597 - GFF4715 0.29 -0.3
77,597 - GFF4715 0.29 +0.4
77,728 + GFF4715 0.40 -0.4
77,728 + GFF4715 0.40 -0.1
77,729 - GFF4715 0.40 -0.8
77,729 - GFF4715 0.40 -0.1
77,746 + GFF4715 0.42 -0.1
77,746 + GFF4715 0.42 -0.9
77,747 - GFF4715 0.42 -0.8
77,747 - GFF4715 0.42 +0.1
77,747 - GFF4715 0.42 -0.3
77,747 - GFF4715 0.42 -0.2
78,043 + GFF4715 0.68 +0.3
78,043 + GFF4715 0.68 +0.2
78,043 + GFF4715 0.68 +0.5
78,043 + GFF4715 0.68 +0.1
78,043 + GFF4715 0.68 +0.1
78,208 + GFF4715 0.83 -1.2
78,208 + GFF4715 0.83 -1.2
78,208 + GFF4715 0.83 -0.1
78,208 + GFF4715 0.83 +0.4
78,209 - GFF4715 0.83 +0.2
78,209 - GFF4715 0.83 +0.2
78,209 - GFF4715 0.83 -0.5
78,209 - GFF4715 0.83 +1.0
78,209 - GFF4715 0.83 -0.3
78,209 - GFF4715 0.83 -1.1
78,209 - GFF4715 0.83 +0.1
78,209 - GFF4715 0.83 -0.4
78,229 + GFF4715 0.85 +0.8
78,229 + GFF4715 0.85 -0.6
78,229 + GFF4715 0.85 +0.6
78,230 - GFF4715 0.85 -0.1
78,230 - GFF4715 0.85 -0.3
78,230 - GFF4715 0.85 +0.8
78,230 - GFF4715 0.85 +0.2
78,230 - GFF4715 0.85 +0.9
78,230 - GFF4715 0.85 -0.4
78,259 + GFF4715 0.87 +0.4
78,260 - GFF4715 0.87 -0.3
78,260 - GFF4715 0.87 +1.5
78,260 - GFF4715 0.87 -0.8
78,260 - GFF4715 0.87 +0.4
78,260 - GFF4715 0.87 -0.1

Or see this region's nucleotide sequence